Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02588 ATGAACCCTTACGACAATCGTTACTCCGATTCCACTTCTTTTCGCGGCCGCCGCAGTGATCTTGTTGGACCTATGCCGCCGCCTAATTTCGGCCGTGGCGGTCCTGCTCCGTACACTGCTCCTTATGCACCACACGCACCTACCGGTTTCGGATCTGCATCTGTTACTCCGGTTCCTCAATTTTTGCCTCCTCCTGGTGGAGGTGGATTTAGCGTAGGtcgtggtggtggtggtggttttgGTCCTAGAACGGGTAACGGTTACACTGGTGATAGAAAGTATGACACGGGTCGTTATGGTGGTAGTGGTGGTGGAAGAGGTCGTGGTGGCGGTGGTGGTAGAGGTGGAAGTCAAGGTTTTAGAGGCTCTGGTAGAGGAGGTAGTGGAGGGAGAGGTGGTGGGTTTGGAGGTAGACATGGATCTTCTAAAGATGATTTGAATAACATTAATCTTCCAAAGCAAGATTTTAGGAATTTGGTACCTTTTCAGAAGAATTTCTATATTGAAAGTCCTCAGATACAAGCTATGTCTGATAATCAAGTTATGCAGTACCGAGCTAGTAGGGATATCACTGTGGAAGGGCATGATGTGCCAAAGCCAATTCGGTCTTTTCATGAGGCTAATTTTCCTGATTACTGTCTTGATGTCATTGCCAAGTTGGGTTTTGTTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTACTGGTAGGGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTACTTCCTGCTTTAGTTCATGTCAGTGCACAACCTCGATTGACACAAGGGGAAGGTCCTATTGTCTTGGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGATCAAGTATTAAATGTACATGCATATATGGCGGTGCTCCAAAGGGGCCACAAATCCGTGACCTTAGAATGGGTGTTGAGATTGTTATTGCTACTCCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCATACAAACCTGCAGAGAGTGACATACCTTGTCTTGGATGAAGCTGATCGAATGTTGGATATGGGTTTTGAACCTCAGATTCGGAAGATTGTTAACCAGATTCGACCAGATAGGCAGACATTATACTGGAGTGCAACGTGGCCAAAGGAGGTTGAAACTCTGGCAAGACAGTTTCTGCAGAACCCGTACAAGGTAGTTATTGGATCACCATATCTAAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTCACTGACATGGAGAAATATAACAGATTGATCAAGCTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTACTGAAACAAAAAAGGGATGTgatcaaattacaaaacaaTTGAGAATGGATGGATGGCCAGCATTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCACTGTGTGTTTAGAATCATAG 1563 0.4376 MNPYDNRYSDSTSFRGRRSDLVGPMPPPNFGRGGPAPYTAPYAPHAPTGFGSASVTPVPQFLPPPGGGGFSVGRGGGGGFGPRTGNGYTGDRKYDTGRYGGSGGGRGRGGGGGRGGSQGFRGSGRGGSGGRGGGFGGRHGSSKDDLNNINLPKQDFRNLVPFQKNFYIESPQIQAMSDNQVMQYRASRDITVEGHDVPKPIRSFHEANFPDYCLDVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLTQGEGPIVLVLAPTRELAVQIQQEAMKFGSRSSIKCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVETLARQFLQNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLLKEVMDGSRILIFTETKKGCDQITKQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLGRITVCLES 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02588 520 Pfam DEAD/DEAH box helicase 226 397 IPR011545 GO:0003676|GO:0005524
Tsu04g02588 520 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 354 362 IPR000629 -
Tsu04g02588 520 Pfam Helicase conserved C-terminal domain 432 511 IPR001650 -
Tsu04g02588 520 Gene3D - 165 412 IPR027417 -
Tsu04g02588 520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 436 520 IPR001650 -
Tsu04g02588 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 511 IPR027417 -
Tsu04g02588 520 SMART ultradead3 221 424 IPR014001 -
Tsu04g02588 520 PANTHER LD32873P 70 511 - -
Tsu04g02588 520 MobiDBLite consensus disorder prediction 1 37 - -
Tsu04g02588 520 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 70 511 - -
Tsu04g02588 520 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 202 230 IPR014014 GO:0003724
Tsu04g02588 520 CDD SF2_C_DEAD 421 511 - -
Tsu04g02588 520 MobiDBLite consensus disorder prediction 64 150 - -
Tsu04g02588 520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 408 IPR014001 -
Tsu04g02588 520 CDD DEADc_DDX5_DDX17 214 409 - -
Tsu04g02588 520 Gene3D - 413 512 IPR027417 -
Tsu04g02588 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 410 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02588 Tsu-Chr4 29214579 29219314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02588 190 511 Eukaryotic Initiation Factors Gene Family AT3G19760 33.127 1.30e-49 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02588 K12823 - gmx:100817092 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02588 04 29214579 29219314 Tsu04g02588 04 29214579 29219314 ECH