Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02555 ATGTCTATCACTTCCTTCAAATCTCTAACAATGGCTGAATCATGTTTACTCTCTCAACCTTCACTCTTCTACACCAAAACCAAATCCTCATTCATTTCAAACTCTTCTAAGTCCTTCAAGATACAAAACCCATCATTCAATTCTTCAAAGTTTTCACACTCTATTTCTCTCACTACCAGTAACAGAAAAACACGTGATTCTTCTTTTGTTACATTTGTTGCACAGACATCTGATTGGACTCaggaagagaaagaagatgGAGCATGGGAAAATCAAGGTGAAACTGCTTGGGTTGGTGAAACTGAAACTGCTGAGAGTGAAAGTGATGTTGGTAAATTTGAGGAACCATCTGAAGATTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGAGAAATTGGCTGAGCTTTTTGAACAGGCTGGGACTGTTGAAGTTGCTGAgGTAATTTATAACAGGGAGACTGACCGTAGTCGTGGGTTTGGATTTGTAACAATGAGTAACGCTCAAGAAGTTGAGAGGGCTGTGAACAAGTTCAGTGGCTATGAATTAGATGGAAGATTGTTGACTGTTAATAAGGCCGCTCCAAGAGGAGCACCACGGCCTGAGCGCCCACCACGTACCTTTGATTCTGGTTCTGGTTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGACAATTCTAGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTCGAGAATGCTCGGGTAATCTCTGACAGAGACACCGGTCGGTCACGTGGTTTTGGCTTTGTTACAATGGCGAGTGTGGATGATGTGAATGAAGCCATTGCTGCTCTTGACGGTCAGGAATTGAATGGGAGGCCAATCAAAGTGAATGTTGCTGAGGATAGACCCAGGCGCGATTTCTGA 906 0.4172 MSITSFKSLTMAESCLLSQPSLFYTKTKSSFISNSSKSFKIQNPSFNSSKFSHSISLTTSNRKTRDSSFVTFVAQTSDWTQEEKEDGAWENQGETAWVGETETAESESDVGKFEEPSEDLKIFVGNLPFDVDSEKLAELFEQAGTVEVAEVIYNRETDRSRGFGFVTMSNAQEVERAVNKFSGYELDGRLLTVNKAAPRGAPRPERPPRTFDSGSGLRVYVGNLPWDVDNSSLEQLFSEHGKVENARVISDRDTGRSRGFGFVTMASVDDVNEAIAALDGQELNGRPIKVNVAEDRPRRDF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02555 301 CDD RRM_HP0827_like 218 294 - -
Tsu04g02555 301 Gene3D - 59 202 IPR012677 -
Tsu04g02555 301 Gene3D - 203 300 IPR012677 -
Tsu04g02555 301 PANTHER RIBONUCLEOPROTEIN 107 300 - -
Tsu04g02555 301 PANTHER RIBONUCLEOPROTEIN 2 91 - -
Tsu04g02555 301 CDD RRM_HP0827_like 121 198 - -
Tsu04g02555 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Tsu04g02555 301 SMART rrm1_1 218 291 IPR000504 GO:0003723
Tsu04g02555 301 SMART rrm1_1 121 194 IPR000504 GO:0003723
Tsu04g02555 301 SUPERFAMILY RNA-binding domain, RBD 116 210 IPR035979 GO:0003676
Tsu04g02555 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Tsu04g02555 301 SUPERFAMILY RNA-binding domain, RBD 215 299 IPR035979 GO:0003676
Tsu04g02555 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Tsu04g02555 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Tsu04g02555 301 PANTHER OS02G0815200 PROTEIN 2 91 - -
Tsu04g02555 301 PANTHER OS02G0815200 PROTEIN 107 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02555 Tsu-Chr4 28785921 28790627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02555 122 299 Eukaryotic Initiation Factors Gene Family AT3G16380 32.620 6.17e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02555 - - gmx:100811487 355.14