Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02554 ATGGCAGAATCATGGTTACTCTCTCAACCTTCTTCACTTTTGTACACCAAAAACAAAGTCCAAATTATCTCAAATTCTTTTAAGCCCTTCAAGCTACAAAACCCATCATCATCATGTAATAATACTTCATCATTTTTGCCGTCTCTCCTTCTCACTACTAGAAGGAGAAGAACACGCCATTCTCCTCATCTCACATTTGCGGTTGGTGCAGTTGGAAATTCTTCTCAAGATTTGAAGATTTTCATCGGAAATTTAACTTCTGATATTAATGTCGACAAATTAACCGCACTTTTTGGACAGGCGGGGACTGTAGTGCATGCTGAGGTAATTTATACTTGGGATAGTAGCATAAGGTTTGCATGTGTAACCATGAGTACTGTCGAAGAAGTTGAGAAGGCTGTGAACAAGTTCAATGGCTATgaattaaatgaaaaattgttgaCAGTTAGTACTACGGATGATCCAAGAAAAACACAACCCGATCTTCCATCACGTCCACTTGCATTTGATTCTCCTTTTAGTGTCTACGTTAATAGCTTGACGCGGGAAATTGACGATGCTGGCTTGGAAGAAATTTTCAGCAAATATGGTAAGGTTGAGAGTGTTGAGATAGTCCGCGATAAAGTGACCGGTAAAACACGTGGTTTTGGCTTTGTTACAATGTCGAATGAGACTGATATGAAAAATGCCATTGCTGGTCTTCACAAAAAGATGGACATGGGAGACAGAAAATTGATGGTTTCTGAGTTACCGCGTAACTTGTAA 765 0.3869 MAESWLLSQPSSLLYTKNKVQIISNSFKPFKLQNPSSSCNNTSSFLPSLLLTTRRRRTRHSPHLTFAVGAVGNSSQDLKIFIGNLTSDINVDKLTALFGQAGTVVHAEVIYTWDSSIRFACVTMSTVEEVEKAVNKFNGYELNEKLLTVSTTDDPRKTQPDLPSRPLAFDSPFSVYVNSLTREIDDAGLEEIFSKYGKVESVEIVRDKVTGKTRGFGFVTMSNETDMKNAIAGLHKKMDMGDRKLMVSELPRNL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02554 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Tsu04g02554 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 241 IPR000504 GO:0003723
Tsu04g02554 254 Gene3D - 70 157 IPR012677 -
Tsu04g02554 254 Gene3D - 158 252 IPR012677 -
Tsu04g02554 254 SMART rrm1_1 79 150 IPR000504 GO:0003723
Tsu04g02554 254 SMART rrm1_1 174 248 IPR000504 GO:0003723
Tsu04g02554 254 SUPERFAMILY RNA-binding domain, RBD 159 248 IPR035979 GO:0003676
Tsu04g02554 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 154 IPR000504 GO:0003723
Tsu04g02554 254 PANTHER OS02G0815200 PROTEIN 75 237 - -
Tsu04g02554 254 PANTHER RIBONUCLEOPROTEIN 75 237 - -
Tsu04g02554 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 252 IPR000504 GO:0003723
Tsu04g02554 254 SUPERFAMILY RNA-binding domain, RBD 74 167 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02554 Tsu-Chr4 28774884 28776652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02554 40 248 Eukaryotic Initiation Factors Gene Family AT1G22760 26.267 1.03e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02554 - - gmx:100811487 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02554 04 28774884 28776652 Tsu03g02333 03 26364181 26366551 ECH
Tsu04g02554 04 28774884 28776652 Tsu04g02554 04 28774884 28776652 ECH
Tsu04g02554 04 28774884 28776652 Tsu03g02333 03 26364181 26366551 PCT