Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02553 ATGTTTATCACGATGACACAATCATGCCTACTCTCTCAACATTCACTCTTATACACCAAAACCAAATTTCCAATTATCTCAAATTGTGTGAAGCCCTTCAAGCTACAAAGCCCATCATCATTTAACAATAATTCTTCAACATTTTCGCGCTCTCTCCCTCTCACTACTATAACGAGAACAACCCGCCGTTCTTCTTTTCTCACATTTGCTGTTGATAAAGATGGGAATTTCGATGATCCAAATAAAAGTTTGAATATCTTTGTTAGTAATTTGCCTGGTGGTCTTAAACTTGGGAAATTGTTTATGCTTTTTGAGGAGGTTGGGACTGTAAATGCTGCTTCGCTAAATGCTGGTGATGTTGGTGGCCAGAGTTTTGCAAGTGTAACTATGAGTACAGTTGAAGAAGTTGAGCAGGCTATCAACAAGTTCAATGGCTATGAATTAAATGGAAAATTGTTGACACTTAGTAGGGAGAAACCTATAAAAGAACAGCCAAAGCCTCAACAACGTCCTCGTGCCTATGATTCTGATTTTGGTATCCGCATTCAGAACTTGCCGAGGGATGTTGACAATGGTCGCTTGGAGGAACTTCTCAGTAAATATGGTAAGGTTGAGAGTGTTGAGATAGTCTACAACGAACAGTTGGATGAATCAACTGGCTATGCTATAATGGCCAATGAGACTGATATGAATAATGCCATTCATTATCTTTTCGCTTGGAGGTGGAAAGACAAGGAACCCGGATTGTTAGTTTATCCAGTAAACCTCCAAGTGAAGGATCCATCTAGCAACTGGTAG 798 0.3972 MFITMTQSCLLSQHSLLYTKTKFPIISNCVKPFKLQSPSSFNNNSSTFSRSLPLTTITRTTRRSSFLTFAVDKDGNFDDPNKSLNIFVSNLPGGLKLGKLFMLFEEVGTVNAASLNAGDVGGQSFASVTMSTVEEVEQAINKFNGYELNGKLLTLSREKPIKEQPKPQQRPRAYDSDFGIRIQNLPRDVDNGRLEELLSKYGKVESVEIVYNEQLDESTGYAIMANETDMNNAIHYLFAWRWKDKEPGLLVYPVNLQVKDPSSNW 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02553 265 Gene3D - 79 158 IPR012677 -
Tsu04g02553 265 PANTHER OS02G0815200 PROTEIN 65 235 - -
Tsu04g02553 265 PANTHER RIBONUCLEOPROTEIN 65 235 - -
Tsu04g02553 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 153 IPR000504 GO:0003723
Tsu04g02553 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 234 IPR000504 GO:0003723
Tsu04g02553 265 SMART rrm1_1 85 156 IPR000504 GO:0003723
Tsu04g02553 265 SMART rrm1_1 179 252 IPR000504 GO:0003723
Tsu04g02553 265 Gene3D - 159 246 IPR012677 -
Tsu04g02553 265 CDD RRM_SF 180 237 - -
Tsu04g02553 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 224 IPR000504 GO:0003723
Tsu04g02553 265 SUPERFAMILY RNA-binding domain, RBD 82 235 IPR035979 GO:0003676
Tsu04g02553 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 160 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02553 Tsu-Chr4 28769582 28771164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02553 85 225 Eukaryotic Initiation Factors Gene Family AT1G22760 26.667 4.44e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02553 - - gmx:100804984 136.732