Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02544 ATGACTACAACACTCTCTTcccttttcttccttttctcttTCCTCACATTTTCTCTCATTTCCTCTTCACCCCTTCAAGACCCTCATTTAGTCACACAAGAAGTTAACAGAAAAATTAATGGCTCATTAGCTAGGAGGAATTTGGGGTATCTCTCATGTGGTAGTGGAAACCCAATTGATGATTGTTGGAGATGTGACAAAAACtgggaacaaaacagacaaagACTAGCAGATTGTGCAATTGGGTTCGGCAAAAATGCGATCGGCGGTAAAAACGGTAAAATTTACGTTGTAACTGATTCCGGTGATGATGATCCCGTTAACCCAAGACCTGGTACAATCCGTTACGCCGTAATTCAAGATGAACCATTATGGATAATTTTTGCAAGAGACATGGTGATTCAACTAAAAGAAGAACTCATAATGAATTCTTTTAAGACAATTGATGGAAGAGGAGCTAGTGTTCATATTGCTGGTGGTCCTTGTATAACAATTCAGTATGTAACAAATGTTATAATACATGGTATACATATACATGATTGTAAACAAGGTGGTAATGCTATGGTGAGAGACTCCCCACGGCATTATGGGTGGAGAACAGTATCAGATGGTGATGGTGTGTCTATCTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTATCTAACTGTAATGATGGTTTAATTGATGCTATACATGGGTCCACTGCAATTACAATTTCTAACAATTATATGACACATCATGATAAAGTCATGCTTTTGGGTCATAGTGATACTTATACTCAAGACAAGAACATGCAAGTCACTATTGCTTTTAATCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAaggtattcatttttttaa 873 0.3517 MTTTLSSLFFLFSFLTFSLISSSPLQDPHLVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDKNWEQNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVNPRPGTIRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRYSFF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02544 290 PANTHER PECTATE LYASE 22-RELATED 15 287 - -
Tsu04g02544 290 PANTHER PECTATE LYASE 18-RELATED 15 287 IPR045032 GO:0030570
Tsu04g02544 290 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Tsu04g02544 290 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Tsu04g02544 290 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Tsu04g02544 290 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Tsu04g02544 290 PRINTS Pollen allergen Amb family signature 283 290 IPR018082 -
Tsu04g02544 290 Gene3D - 56 290 IPR012334 -
Tsu04g02544 290 SUPERFAMILY Pectin lyase-like 34 289 IPR011050 -
Tsu04g02544 290 SMART amb_all 131 289 IPR002022 -
Tsu04g02544 290 Pfam Pectate lyase 139 287 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02544 Tsu-Chr4 28668685 28670236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02544 7 286 Polysaccharide Lyase AT5G63180 83.214 7.95e-180 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02544 K01728 - gmx:100779940 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02544 04 28668685 28670236 Tsu03g02555 03 30949279 30952010 ECH
Tsu01g04930 01 56219827 56226327 Tsu04g02544 04 28668685 28670236 ECH
Tsu04g02544 04 28668685 28670236 Tsu04g02544 04 28668685 28670236 ECH
Tsu04g02544 04 28668685 28670236 Tsu03g02555 03 30949279 30952010 PCT