Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02540 ATGGATGGTAGAAGGCATTCTGTTGATGTACCTATTTCTAAAACTCTTGTGGCATTAAGGAGAGTAAGGTCATTAAGGGATCCTTCAACAAATGGTATTAGCAATCTCTCTCCTTTGATTGATAATGAGCATTGGGAAAATGGGATTTCTTTAAGGTTTGTTAATGCTACTTATGCATGTGATTCTGATGATAATGGTTATTTAAGGTCAAAAGATTTAGATTTTAAGGGTCATAGAGAACATGGTACTACTActaattttgaaaagaattgtTATTGTGAGGAACATCAACAAGATGATGAATTAGTTTACTCTAATCCTAACCAGGGTATTTGTGGTAATAAATCACCAAAAGAAAGCTGTTGTAGTAACCATGAAGCTATAGGGTTGGATTTGGCTTCTGTTATTCCGTATAGTAATCATTTGAAGGATGAGGAATCATGCTATTTATCAACTGCATTGTCATCAAAATTAGGGAGAATGGATTACACAAAGTCGACTAGAAAGTTTATGCGGAAGAATCAAGTGAAACCGTTTGAATTGATGCGTGATAATGGAAGTAGTGTTGAGAGTCCATGTCTTAGTGCCTCAACACATACACCTCAAGATGTTGATGTTTTAGTTGATAACAATGGTTGTGGAATAAGCTGTTGTTGGTCGAAATCACCGAGGTTTAAAGACGCAAATTATTATTCTGAAATGGAAGATCTTCCGTTGATGTTGCAGCATGTTAATGAGACAGATCTTCATGGACATAAAAGCATGAGACATAATGGTGGTGAGATTAGTCCAACATTGGAAACTCCTAGAAGTTTGTCTATGAAATTCAAGCCAAAATCTTTTGATGATTTGGTTGGACAAAATGTGGTTGGAAAGTCTCTTTTGGGTGCCATCTATAGAGGAAGGATAGCATCATTTTATCTTTTCCATGGTCCTCGTGGCACGGGAAAGACATCTGCATCAAGGATATTTGCTGCTGCGCTAAATTGCCTCTCGTACGAGGAGAAAAAGCCGTGTGGTTGTTGTAGAGAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAATTGACTCTTTGAGAATTAACCGTTCCGACAAGGCTAAATCCCTTGTTAAGAATGCATGCACAACAACTCCAGTTTCATCGCGTTTTAAGGTGTTCATTATTGATGAGTGCCAGTTATTGAATAAGGAAACATGGGGGACTCTTCTGAGTAGCTTAGGGAGTGTTTCTCAACATGTGGTTTTTGTGATGATTACTCCTGATTTGGATAAGCTTCCACGAAGTGCGGTTTCTCGAGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCCGACATTGCAAACAGATTGAAAAGAATTTGTGCTGAGGAGGGTCTTGAATCTGAACAAGATGCTTTGGACTTTATTTCTGCTAAATCATGTGGTTCTCTTAGGGATGCAGAAATGATGCTTGATCAACTAAGTTTACTTggtaaaaaaatcacaatttccTTAGTCTACGAACTTACCGGAGTAATTTCTGATGATGAATTGCTTGATTTGCTGGACCTGTCTTTGTCATCCGACACTTCAAATACCGTCATAAGAGCTCGGGAGCTGTTGAGATCAAGGATAGATCCTTTACAACTTATATCTCAGCTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATGTGAACTTAATGGTTCTGAAATCAGAAGAAGATTTTCTGATAAACATATTTCGGAAGCAAGCATGCATAAACTTAGTCACGCATTAAGAATACTTTCTGATGCGGAGAAGCAATTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCACTTCTGCAGTTAAGCTCTATAGATTATTCATCTGTTGATGCTAATGATGCCAAGTTGTGTCTGACAGCTGCATCCAATAGAGATGTTGATTTATGCAGTACATCATCGACAGGTGAAACTTTGAAGCGTCTCGCTACAGGTAAGTGTGACGAGAAGTCATATAAAATAGAGGTTCCGGAGGATGATAAAGCGACATTGGATTCTATATGGTATAAAGCTACTGAGTTATGTCAATCTAAAAGGCTCAAGGCTTTTCTTAGGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGTCTTGCGGTTGTGGAGTTGGAGTTTAACCATCGTGTCTACGTAGCTAGAGCTGAGAAATCATGGAAACAAATTGCAAGTTCCCTACAGTTCATATTAGGCTGCCACATTGAGCTCAGAATCAACCACGTACCATGTACTTCAGATTCAAAGTATGCTAAATTGAAGAGGTCATCATTCAATTTCTTTAATTGTTCGCGCAGAATTCTTCGAAAATCACTATCAACCGATGAACAAGGATGTGAATCAGACTATGCTGATTGCACCTCACAAAAGCCTATGATGATGGACCGAACTCTATCTCGCTCCTCTGATTGCGGATCTCGTGCACCACCTCATGAGTCCTACCATGGAATGGAACTTGCAACAACTCTTAGAAGCTGTGAAGGCAATTTACTAAGCTCAGGAAAGATATTTCTGAATAGGATAGATCAAGAGACTCCGAGGATTTCGTTTTCTAGAAACGATTCTGTCAAAGAAGAAGGGTGCAATCATGAAGATCTTGCTTCATCAACTTTTGATTTAGATAATAACCGTTCTAACTGTTTTCCTCGAACGCTTTGGCTTCGTAGAAAATTCGCATCTTCGTATGCGTCAAAACAAAAGGAGTTTTGTTTTACCAATCCCCAAGTACAAATGGTTTCACGATCTTCTTCTCTTCGTTTTCGCTTCTTCTCAGTTCGTTGCAGTTTTTTCGGATTTGAAATATCTACTTTCTTCTCCTGTCTTGGCTCGAGATCCGGGCCAAGCACAGAAGAATCAAGTTCTGATTTGCATTTTCAAACCACCGGTGAACGTGTTTGTGTTATTGTGTCAATGGCGTCCAATGAGGGATTTCTGACTGAAGGACAGAGGGAGATGTTGAAGATTGCTAGTCAAAATGCTGAGATTTTGTCTTCTTCGCCTAAGTCGCCGTCGTCTTTGCTTGCTGATCATCACATCAAAGCTCCTGCTGGTGGTGGTAAGGCTCAAACTGCTGGGATAGCTGTCAGGCATGTGCGGCGGTCACATTCTGGAAAGTATGGGCGTGCGAAGAAGGATGGTGCTGGTGGCAAGGGCACTTGGGGAAAATTGCTGGACACAGAAGTTGATTCTCACATAGACCGCAATGATCCAAATTATGACAGTGGGGAGGAACCCTATCAGCTTGTTGGATCTACTGTTACTGATCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCCTTGTAGATGAATACTTCAGTAATGGGGATGTAGATTTGGCAGCATCTGACCTAAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAACGACTTGTTTCCATGGCCATGGATAGGCATGATAAGGAAAAAGAAATGGCTTCTGTTCTACTTTCAGCACTGTATGCTGATGTCATTAGTCCCACGCAGATTAGGGATGGTTTTTTTATGCTTCTTGAGTCTGCTGATGATCTTGCAGTGGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCAAGGAAGGCCCTTCCAGAatcttccaagggatttcaggTAATCCAAACTGCCGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTTGAAAGACGATGGGGTGGTAGCACTCACATTACTGTTgaagaagtgaagaaaaagattgCTGATTTACTTAGAGAATATGTGGATAGCGGTGAGACACTTGAAGCCTGTAGGTGTATACGCGAGTTGGGAGTTGCATTCTTCCATCATGAGGTTGTGAAGAAGGCCCTGGTACTTGCTATGGAGATTCCTTCGGCAGAACCTCTACTGTTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTGATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGGCCTAGATGATCTTGCTCTTGATATTCCGTCAGCTAAAGCCCTGTTTCAGTCATTTGTCCCCAAGGCAATCTCTGAAGGATGGCTTGATGCTTCCTTTGCCAATCCAGCTGGTGAAGATGGGGAATTCCAAGCTGAAGATGAGAAGGTTAGGAAATACAAAAAGGAAGCTGTAACTATAATTCATGAGTATTTTCTCTCTGACGACATTCCTGAACTCATTCGAAGTCTAGAAGATCTTGGAGCACCCGAGTATAACtcaatatttttgaagaggCTAATAACACTTGCTTTGGACAGAAAGAACAGAGAAAAGGAAATGGCGTCTGTCCTGCTATCTGCACTTCATATAGAGATATTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAATGCAGAAGATACAACACTGGACATACTGGATGCTTCAAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTGATTGACGATGTGCTTGCCCCATTGAACTTGGATGAAATTGGCAGCAGGCTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGTATGGCTCGAACTCTCTCATCTGCTCGTCATGCAGGTGAAAGGCTATTGAGATGCTGGGGTGGAGGAACTGGATGGGCTGTGGAGGATGCCAAGGACAAGATCACAAAGCTCTTGGAGGAGTACGAAAGTGGTGGGGTTGTCAGTGAAGCATGCCAGTGCATTCGGGACTTAGGGATGCCTTTCTTTAACCACGAGGTAGTGAAGAAAGCTTTGGTCATGGCCATGGAGAAGAAGAACGATAGGTTGCTAGGTCTGCTGCAGGAGTGCTTTAGTGAAGGCCTTATCACCACCAATCAGATGACTAAAGGGTTCACTCGAATTAAGGATGGTCTCGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAAAAATTTGCTTTCTATGTGGAGCATGCTCAGAGCAAGGGCTGGCTTCTACCATCATTTGATTCCTCTGCCACAGATGTCTAA 5067 0.4081 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISNLSPLIDNEHWENGISLRFVNATYACDSDDNGYLRSKDLDFKGHREHGTTTNFEKNCYCEEHQQDDELVYSNPNQGICGNKSPKESCCSNHEAIGLDLASVIPYSNHLKDEESCYLSTALSSKLGRMDYTKSTRKFMRKNQVKPFELMRDNGSSVESPCLSASTHTPQDVDVLVDNNGCGISCCWSKSPRFKDANYYSEMEDLPLMLQHVNETDLHGHKSMRHNGGEISPTLETPRSLSMKFKPKSFDDLVGQNVVGKSLLGAIYRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSYEEKKPCGCCRECVLFFSGRSKDVKEIDSLRINRSDKAKSLVKNACTTTPVSSRFKVFIIDECQLLNKETWGTLLSSLGSVSQHVVFVMITPDLDKLPRSAVSRAQRYHFAKIKDADIANRLKRICAEEGLESEQDALDFISAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELNGSEIRRRFSDKHISEASMHKLSHALRILSDAEKQLRISKNQTTWFTAALLQLSSIDYSSVDANDAKLCLTAASNRDVDLCSTSSTGETLKRLATGKCDEKSYKIEVPEDDKATLDSIWYKATELCQSKRLKAFLRKQGKLSSVCINQGLAVVELEFNHRVYVARAEKSWKQIASSLQFILGCHIELRINHVPCTSDSKYAKLKRSSFNFFNCSRRILRKSLSTDEQGCESDYADCTSQKPMMMDRTLSRSSDCGSRAPPHESYHGMELATTLRSCEGNLLSSGKIFLNRIDQETPRISFSRNDSVKEEGCNHEDLASSTFDLDNNRSNCFPRTLWLRRKFASSYASKQKEFCFTNPQVQMVSRSSSLRFRFFSVRCSFFGFEISTFFSCLGSRSGPSTEESSSDLHFQTTGERVCVIVSMASNEGFLTEGQREMLKIASQNAEILSSSPKSPSSLLADHHIKAPAGGGKAQTAGIAVRHVRRSHSGKYGRAKKDGAGGKGTWGKLLDTEVDSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSLVDEYFSNGDVDLAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPTQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGETLEACRCIRELGVAFFHHEVVKKALVLAMEIPSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFQSFVPKAISEGWLDASFANPAGEDGEFQAEDEKVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNSIFLKRLITLALDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLENAEDTTLDILDASNELALFLARAVIDDVLAPLNLDEIGSRLPPKCSGSETVRMARTLSSARHAGERLLRCWGGGTGWAVEDAKDKITKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRLLGLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFAFYVEHAQSKGWLLPSFDSSATDV 1688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02540 1688 Pfam DNA polymerase III, delta subunit 288 445 - -
Tsu04g02540 1688 CDD HLD_clamp_pol_III_gamma_tau 445 508 IPR045085 -
Tsu04g02540 1688 Gene3D - 1100 1248 - -
Tsu04g02540 1688 Gene3D - 1395 1548 - -
Tsu04g02540 1688 ProSiteProfiles MI domain profile. 1271 1392 IPR003891 -
Tsu04g02540 1688 SUPERFAMILY ARM repeat 1565 1683 IPR016024 -
Tsu04g02540 1688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 495 IPR027417 -
Tsu04g02540 1688 SUPERFAMILY post-AAA+ oligomerization domain-like 515 616 IPR008921 GO:0003677|GO:0006260
Tsu04g02540 1688 Pfam MA3 domain 1407 1516 IPR003891 -
Tsu04g02540 1688 Pfam MA3 domain 1108 1219 IPR003891 -
Tsu04g02540 1688 Pfam MA3 domain 1570 1677 IPR003891 -
Tsu04g02540 1688 Pfam MA3 domain 1272 1383 IPR003891 -
Tsu04g02540 1688 Gene3D - 265 443 IPR027417 -
Tsu04g02540 1688 SUPERFAMILY ARM repeat 1403 1562 IPR016024 -
Tsu04g02540 1688 SUPERFAMILY ARM repeat 1105 1265 IPR016024 -
Tsu04g02540 1688 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 271 618 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Tsu04g02540 1688 CDD AAA 285 436 - -
Tsu04g02540 1688 Gene3D - 1556 1685 - -
Tsu04g02540 1688 Gene3D - 1258 1390 - -
Tsu04g02540 1688 ProSiteProfiles MI domain profile. 1107 1228 IPR003891 -
Tsu04g02540 1688 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 986 1680 - -
Tsu04g02540 1688 PANTHER PROGRAMMED CELL DEATH 4 986 1680 IPR039778 GO:0045892
Tsu04g02540 1688 SUPERFAMILY ARM repeat 1268 1389 IPR016024 -
Tsu04g02540 1688 ProSiteProfiles MI domain profile. 1405 1526 IPR003891 -
Tsu04g02540 1688 Gene3D - 446 507 - -
Tsu04g02540 1688 ProSiteProfiles MI domain profile. 1568 1687 IPR003891 -
Tsu04g02540 1688 SMART ma3_7 1272 1383 IPR003891 -
Tsu04g02540 1688 SMART ma3_7 1406 1517 IPR003891 -
Tsu04g02540 1688 SMART ma3_7 1108 1219 IPR003891 -
Tsu04g02540 1688 SMART ma3_7 1569 1678 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02540 Tsu-Chr4 28606420 28617921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02540 262 510 Core DNA Replication Machinery Family AT1G21690 25.000 7.85e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02540 - - pvu:PHAVU_003G207500g 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02540 04 28606420 28617921 Tsu04g02540 04 28606420 28617921 ECH
Tsu04g02540 04 28606420 28617921 Tsu03g02550 03 30819988 30823336 PCT