Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02537 ATGGAGCATTCTGAAACCGATTTAGCTCCTCTTTCCAACGGGGTTCAACCCCAACAACTTTCTCACCAAGATTCTTCTTCCCCTCTTGTTGTTGATCATTCTCCTCCGTCAGATCTCAATCAAACGGCCGAGAATCATAATGATCATGATGATTCACTCGCTGTCGAGCTTCATGATAAGCTCGATTTGAAGGTTCTAGATGAAAGGGTTGTTGAAACTGGTGATAAAGTTTCGAACTTTATCGACGGTGGAGAAGTTTCCGTTGAAGAAAAATCAATTGAGGGTGAAGTAgtggtagaagaagaagaagattctGTTAAGGGTGAAGTAGTagtagaagaagatgaagaatctgTTAAGGGTGAAAATGAAGAGGAATCTGTTAAGGGTGAAGTAGTAGAAGAAGAGGAATCTGTTAAGGGTGAAGATGTTGAAGAAGATTCTGTTAAGGATGAAGTAGAAGAAGAATTTGTCAAGGGTGAAGAAGGGTTTGATGGAGATAGCAAGGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATGCTGATGGTTATGGCTATGGTGATGGTTATGGTGGTGGTTatggtgatggtggtggttATGGTGATGGCGATGGTTATGGATATGGTGATGGTTATGGTTATGGTGATGCTGATGGAGTTGTagagaaggaagagaaaagTGGTGATGGGGCCCACCAGTTTCCTTTGAGGCCTGAAGCTGAAGATTGTTCATTTTATATGAAGACTGGGAATTGCAAGTTTGGATTCAATTGCAGATTTAATCACCCTATTAGGAGGAAAAATCAGGCTGTTAGGGAGAAGGTGCGAGAAAGAGAAGAACCGGCAGAAAACCCAGGGCAGACTGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAGAGGGTCCACAGCACCAATTTCAGAACTTAACTTTCTCGGTTTACCTATTCGTCTGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGTAGGTTTAATCATCCCGATCCTACAACTGTGGGAGGAGGTGATCCTCAATCAGGGTTTGGTAATGGAGGGTCCGCTTCACTACGGAGTGTATCACAACAATCTTCTGCCTCATGGTCTTCTTCAAGAAAGTTGAATGAAACACCTTTTGTGCCATTGGTGATTACACCTACTCAAGGACTTGCTCCCCAAAGTCCTGACTGGAATGGATATCAGGTAAATACATAG 1299 0.4042 MEHSETDLAPLSNGVQPQQLSHQDSSSPLVVDHSPPSDLNQTAENHNDHDDSLAVELHDKLDLKVLDERVVETGDKVSNFIDGGEVSVEEKSIEGEVVVEEEEDSVKGEVVVEEDEESVKGENEEESVKGEVVEEEESVKGEDVEEDSVKDEVEEEFVKGEEGFDGDSKGWDTNSWNENVNEELGGGRDADGYGYGDGYGGGYGDGGGYGDGDGYGYGDGYGYGDADGVVEKEEKSGDGAHQFPLRPEAEDCSFYMKTGNCKFGFNCRFNHPIRRKNQAVREKVREREEPAENPGQTECKYYQRSGGCKFGKACKFNHTRGSTAPISELNFLGLPIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGGDPQSGFGNGGSASLRSVSQQSSASWSSSRKLNETPFVPLVITPTQGLAPQSPDWNGYQVNT 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02537 432 SUPERFAMILY CCCH zinc finger 247 274 IPR036855 GO:0046872
Tsu04g02537 432 SUPERFAMILY CCCH zinc finger 297 321 IPR036855 GO:0046872
Tsu04g02537 432 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Tsu04g02537 432 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Tsu04g02537 432 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Tsu04g02537 432 MobiDBLite consensus disorder prediction 97 121 - -
Tsu04g02537 432 PANTHER PROTEIN PHOSPHATASE RELATED 9 430 - -
Tsu04g02537 432 Gene3D - 227 285 - -
Tsu04g02537 432 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Tsu04g02537 432 SUPERFAMILY CCCH zinc finger 338 364 IPR036855 GO:0046872
Tsu04g02537 432 MobiDBLite consensus disorder prediction 153 168 - -
Tsu04g02537 432 MobiDBLite consensus disorder prediction 128 152 - -
Tsu04g02537 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 272 IPR000571 GO:0046872
Tsu04g02537 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 363 IPR000571 GO:0046872
Tsu04g02537 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 318 IPR000571 GO:0046872
Tsu04g02537 432 MobiDBLite consensus disorder prediction 97 191 - -
Tsu04g02537 432 MobiDBLite consensus disorder prediction 1 51 - -
Tsu04g02537 432 MobiDBLite consensus disorder prediction 377 401 - -
Tsu04g02537 432 Gene3D - 289 370 - -
Tsu04g02537 432 MobiDBLite consensus disorder prediction 365 401 - -
Tsu04g02537 432 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Tsu04g02537 432 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Tsu04g02537 432 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 430 - -
Tsu04g02537 432 MobiDBLite consensus disorder prediction 9 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02537 Tsu-Chr4 28583292 28587809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02537 243 430 C3H Transcription Factor Family AT1G04990 37.500 1.59e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g02537 zf-CCCH 7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02537 - - mtr:MTR_4g104260 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02537 04 28583292 28587809 Tsu04g02537 04 28583292 28587809 ECH