Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02525 ATGTCCCATAACCTTTATTATACTACTAGTACCTTCAAAGGTGAAGTAGAATATAACAATGATGAAAATCCATTAATGGGTTGTTATGCATCTTTATATCCTAATATGCCTATTTTGGAAAACAGTTCTAATTCATCATGGATTGTTCCATATTCTGATGAAAGTGAAACCATTAGGGATCACAAGAAATTGAAAAGATCAACTATAACTATCCctattttgtttgcaaataTCAGTAACCATAACTCAAACAGCATCAATACTTTCTTCAAAAACAGTATCAAAAGTAGTGTGAATAGCATACCAAGGCTTCATTTCAGAGATCATATAAGAACTTATAAGCAAAGATATTTTGCTGCTGAAGCTGTTGAAGAAGCAGCTGAAGAACATTTCAACTATAATAATTCTGaagctgaagaagaagatggaacATGTGCTGATGGAATGAGATTAGTTCAACTTTTGATTGCTTGTGCTGAAGCTGTAGCGTGTCGCGATAAATCGCACGCTTCGGTTTTATTATCTGAACTTAAATCAAATGCTTTGGTGTTTGGATCATCATTCCAAAGAGTTGCTTCTTGTTTTGTTCAAGGATTGACTGAGAGACTAACTCTGATTCAACCAATTGGTAATAATTCTGTTGGATCAGATACAAAATCAATGATGAACATAATGGATGCTGCATCAGAAGAAATGGAAGAAGCATTCAAATTGGTTTATGAGATATGTCCACATCTTCAATTTGGACATTTTGTGGCAAATTCCATAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTTGACTTAGGCATGAGTCTAGGTCTACCACACGGACACCAATGGCGAGGACTAATTCAAAGTCTCGCAAATCGATCTGGTAGTCAACGTGTTCTTCGTCGGCTTAGGATCACAGCGGTTGGTCTATGCATTGCTAGAATCCAAGTCATTGGTAAAGAACTCTCAATTTACGCGAAAAATTTAGGGGTTCATTTGGAATTCTCAATTGTTGAGAAGAATTTGGAGAATTTGAAACCTGAAGACATAAAAGTGAATGAAAAAGAGGTTCTTGTGGTTAACAGCATTCTTCAATTGCATTGTGTTGTTAAAGAAAGTCGCGGCGCTTTGAATTCAGTTTTACAAATGGTACATGGTCTTTCGCCGAAAGTTTTGGTGATGGTTGAACAAGATTCTGGTCACAATGGACCTTTCTTTCTAGGAAGGTTTATGGAATCATTGCATTATTATTCTGCTATTTTTGACTCATTAGATGCTATGCTACCAAAGTATGATACTAAGAGAGCAAAAATTGAACAGTTTTATTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAAGGACCATTGAGGATGGAAAGGCATGAGAAAGTTGATCAATGGAGGAGGAGAATGAGTAGAGCTGGATTTCAAGGCGCGCCGATTAAGATGGTGGTTCAAGCTAAGCAGTGGCTTTTGAAGAATAAGATTTGTGATGGATATACTGTTGTGGAAGAAAAAGGTTGCTTGGTTCTTGGATGGAAATCAAAGCCAATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1587 0.3598 MSHNLYYTTSTFKGEVEYNNDENPLMGCYASLYPNMPILENSSNSSWIVPYSDESETIRDHKKLKRSTITIPILFANISNHNSNSINTFFKNSIKSSVNSIPRLHFRDHIRTYKQRYFAAEAVEEAAEEHFNYNNSEAEEEDGTCADGMRLVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLTERLTLIQPIGNNSVGSDTKSMMNIMDAASEEMEEAFKLVYEICPHLQFGHFVANSIILEAFEGESFVHVVDLGMSLGLPHGHQWRGLIQSLANRSGSQRVLRRLRITAVGLCIARIQVIGKELSIYAKNLGVHLEFSIVEKNLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALNSVLQMVHGLSPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGAPIKMVVQAKQWLLKNKICDGYTVVEEKGCLVLGWKSKPIVAVSCWKC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02525 528 ProSiteProfiles GRAS family profile. 142 527 IPR005202 -
Tsu04g02525 528 Pfam GRAS domain family 151 527 IPR005202 -
Tsu04g02525 528 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 89 527 IPR005202 -
Tsu04g02525 528 PANTHER DELLA PROTEIN RGL1-LIKE 89 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02525 Tsu-Chr4 28515539 28517125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02525 148 527 GRAS Transcription Factor Family AT1G66350 37.240 1.15e-75 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g02525 GRAS 1.1e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02525 - - gmx:100813548 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02525 04 28515539 28517125 Tsu04g02525 04 28515539 28517125 ECH