Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02509 ATGGCGGCAGGGAGACAAAGTGTTTTAGGTAAAAGAGAATCTTACAAACATGGTTCTGTCGAGGAATTTGATTACTGTAAGAAAGGTTCTTATGGAAAAGATGATAGAGAAGAAGGTGAAATTATTGTTGATGGGGATGAAGCTTTTTCACCGCcacaaaagagaagaaaattcTCTCCTATTGTTTGGGATATGGCTGAGAAGAAGGGGAAGGTTTCTTCCAAAGATAGGGTCACACATGTTGCTGAGTCTCTAACTTGTTCATCCGCGAGTCCTGGAGGCAATGGGTCTTCGATGAATTCCTCTTGCGTGGATGAAGAAAGTGATATGCAGGGATGGAACATCACAAAATCAAAGTGGGCTTCTGATGATCTTTCACCTATGGTTGATGATAAATACAAGCATCACAAAAGAAGCTCAAGTTCAGAAGTTGGTGGTAGTTCAGATAGTACAATTACTAGATCTGATGTTGATGAAGAGGATAGTGATTCTCCATCAGATTCTTTTGAAAATAGTGGTGTGATGCACATGCAGAGAAATTTTAACATGTGTCAGAGTTGCCGAAGTGTGTCCGAGTTTGaaatgattaagaaaataaatgaaggAACTTATGGTGTTGTCTATAAAGCTAAGGATAAGAAGACTGGAGAAATTGTAGCACTTAAGAAGGTGAAGATGGAAATGGAGAGGGATGGCTTTCCAATGACAGCCCTGAGAGAAATGAATATTCTCTTGTCTTTGGACCATCCCTCTATTGTGGATGTTAAAGAAGTAGTCGTGGATGATGATGACTGTGATGATGGTACTTATATGGTAATGGAACATATGCAATACGATCTCAAACAATTGATGGAGGCAAAGACACAACCTTTTAGCATGGGTGAAATTAAATCCTTCATGAAGCAACTTCTCGAAGGAGTCAAGTATCTGCACGACAACTGGATTCTTCATAGGGATTTAAAGACATCTAACATTCTTCTGAATAAAGATGGACATCTGAAAATATGCGACTTTGGAATGTCAAGGCAGTATGGAAGCCCTCTGAAGCAATATACTTCTCTTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGTTGGGCGCTAAAAAATACTCCAAAGCCATTGATATGTGGTCGGTGGGTTGTATAATGGCCGAATTACTTTCAAAGGAGCCACTTTTCAAGGGTAAAACAGAAATCGAACAAATTGACAAGGTAgttttattattactaaaacaattttatatttactttattttcagATCATATAATTTATAA 1281 0.3677 MAAGRQSVLGKRESYKHGSVEEFDYCKKGSYGKDDREEGEIIVDGDEAFSPPQKRRKFSPIVWDMAEKKGKVSSKDRVTHVAESLTCSSASPGGNGSSMNSSCVDEESDMQGWNITKSKWASDDLSPMVDDKYKHHKRSSSSEVGGSSDSTITRSDVDEEDSDSPSDSFENSGVMHMQRNFNMCQSCRSVSEFEMIKKINEGTYGVVYKAKDKKTGEIVALKKVKMEMERDGFPMTALREMNILLSLDHPSIVDVKEVVVDDDDCDDGTYMVMEHMQYDLKQLMEAKTQPFSMGEIKSFMKQLLEGVKYLHDNWILHRDLKTSNILLNKDGHLKICDFGMSRQYGSPLKQYTSLVVTLWYRAPELLLGAKKYSKAIDMWSVGCIMAELLSKEPLFKGKTEIEQIDKVVLLLLKQFYIYFIFRSYNL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02509 426 PANTHER CELL DIVISION PROTEIN KINASE 155 407 - -
Tsu04g02509 426 SUPERFAMILY Protein kinase-like (PK-like) 185 410 IPR011009 -
Tsu04g02509 426 Pfam Protein kinase domain 193 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02509 426 PANTHER CYCLIN-DEPENDENT KINASE 155 407 - -
Tsu04g02509 426 MobiDBLite consensus disorder prediction 84 108 - -
Tsu04g02509 426 SMART serkin_6 193 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02509 426 Gene3D Transferase(Phosphotransferase) domain 1 278 416 - -
Tsu04g02509 426 MobiDBLite consensus disorder prediction 131 172 - -
Tsu04g02509 426 ProSiteProfiles Protein kinase domain profile. 193 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02509 426 Gene3D Phosphorylase Kinase; domain 1 175 277 - -
Tsu04g02509 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02509 Tsu-Chr4 28346261 28349637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02509 188 410 Core Cell Cycle Gene Families AT5G10270 50.000 1.62e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Tsu04g02509 Pkinase 3.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02509 K08818 - gmx:100788840 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02509 04 28346261 28349637 Tsu04g02509 04 28346261 28349637 ECH