Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02501 ATGGAGCCTCCCTCCGGTGCGCACTTCTACCGCTGGCAtccttcatcatcctcttcttcttctccaacaGAGATACCTCATAACATCTTCATCATcgGAGTCTCTGGAGGTACTGCATCGGGGAAAACTACCGTGTGTGATATGATTATTCAACAACTGCAAGATCATAGAGTTGTTCTCGTCAATCAGgATTCTTTCTATCGTGGTTTAACAAATGATGAGTGCAAACGCGTTCATGAGTATAATTTTGACCATCCTGatGCATTTGATACGGAGCAACTTGTAGAAACACTAATCAAGCTTAAATCTGGACAGTCAGTTCAAGTTCCTATTTATGATTTTAAGCTCCACCAGAGAGCTTCTGACAGACACCGACAGGTCAATGCATCTGATGTAATCATCATGGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGCGACATGATGAATATGAAGATATTTGTTGATGCAGATCCGGATGTAAGGCTTGGGCGCAGAATAAAACGAGATACTGTTGAGAGGGGTAGAGACGTGCACTCCGTACTGGAACAGTATGCTAAATTTGTTAAGCCCGCCTTCGATGATTTTATTCTTCCAACCAAAAAGTATGCGGACATAATCATACCTCGTGGGGGAGATAATCATGTAGCAATTGACTTGATCGTTCAACATATCCGCACTAAGCTTGGGCAACATAGCCTCTGTAAGATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATCCGTGATAAGGAAATATCAAAGCAtgactttgttttttattcagATAGGCTAATTCGTTTGGTAGTAGAACATGGTCTCGGTTACTTGCCATTTACAGAGAAACAAGTTACCACACCTACAGGATCAATTTATATTGGAGTTGATTTTTGTAAGAAATTGTGTGGAGTATCTGTTATTAGAAGTGGTGAAAGCATGGAAAATGCTCTGCGTGCATGCTGTAAAggaataaaaataggaaaaattcTCATCCATCGAGATCGTGATGAAACCCAGctTATTTATGAGAAGCTCCCTAAAGATATTTCAGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGTACAGGCAACACTGCCAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCACGGATAATTTTTCTCAATCTAGTCTCTGCTCCTGAGGGAATACATTATGTATGTAAACTTTTTCCGCAACTGAAAGTCGTCACTTCCGAGATTGAAGCAGGACTAAATGACCAGTTCCATGTCGTTCCTGGGTTAGGAGAATTTGGTGACCGGTATTTTGGTACAGACGACTCCTAA 1353 0.3917 MEPPSGAHFYRWHPSSSSSSSPTEIPHNIFIIGVSGGTASGKTTVCDMIIQQLQDHRVVLVNQDSFYRGLTNDECKRVHEYNFDHPDAFDTEQLVETLIKLKSGQSVQVPIYDFKLHQRASDRHRQVNASDVIIMEGILVFHEQRVRDMMNMKIFVDADPDVRLGRRIKRDTVERGRDVHSVLEQYAKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHSLCKIYPNLNVIQSTFQTRGMHTLIRDKEISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVTTPTGSIYIGVDFCKKLCGVSVIRSGESMENALRACCKGIKIGKILIHRDRDETQLIYEKLPKDISERHVLLMDPVLGTGNTASQAIELLIKKGVPESRIIFLNLVSAPEGIHYVCKLFPQLKVVTSEIEAGLNDQFHVVPGLGEFGDRYFGTDDS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02501 450 Pfam Uracil phosphoribosyltransferase 247 447 - -
Tsu04g02501 450 CDD UMPK 31 229 IPR000764 -
Tsu04g02501 450 Pfam Phosphoribulokinase / Uridine kinase family 31 217 IPR006083 GO:0005524|GO:0016301
Tsu04g02501 450 Gene3D - 233 447 IPR029057 -
Tsu04g02501 450 MobiDBLite consensus disorder prediction 1 23 - -
Tsu04g02501 450 SUPERFAMILY PRTase-like 232 448 IPR029057 -
Tsu04g02501 450 PANTHER URIDINE KINASE 12 446 - -
Tsu04g02501 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 222 IPR027417 -
Tsu04g02501 450 PRINTS Uridine kinase signature 59 70 - -
Tsu04g02501 450 PRINTS Uridine kinase signature 29 46 - -
Tsu04g02501 450 PRINTS Uridine kinase signature 161 171 - -
Tsu04g02501 450 PRINTS Uridine kinase signature 197 210 - -
Tsu04g02501 450 PRINTS Uridine kinase signature 104 119 - -
Tsu04g02501 450 PRINTS Uridine kinase signature 175 186 - -
Tsu04g02501 450 PANTHER URIDINE KINASE 12 446 - -
Tsu04g02501 450 TIGRFAM udk: uridine kinase 29 229 IPR000764 -
Tsu04g02501 450 Gene3D - 27 232 IPR027417 -
Tsu04g02501 450 ProSiteProfiles UvrC family, homology region profile. 117 218 IPR001162 GO:0009381
Tsu04g02501 450 CDD PRTases_typeI 302 420 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02501 Tsu-Chr4 28262536 28268228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02501 10 449 PRT Gene Family AT3G27190 79.819 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02501 K00876 - gmx:100816209 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02501 04 28262536 28268228 Tsu04g02501 04 28262536 28268228 ECH