Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02486 ATGGCGACGACGAGGTCACCCAACCGTTCATCTGACGAAACGACGGATCCTACGCCGTTAATCGGAAGTTCATCTGATGAGTCAAACTCCGGACGAAGAGTTCTCCGTGCGCCGAGTCTCCAACAAGCTGCGCGGTTTCTGAGACAAGCGAGTGGGCGGAGGTTGATGCGTGAGCCGTCGATGATGGTGAGAGAAACAGCGGCTGAACAATTGGAAGAAAGACAAAGCGATTGGGCTTATTCAAAGCCGGTTGTAATTCTCGATATTTTGTGGAATTTTGCTTTTATTGTTGCTGCTGTTGCTGTGTTGATTTTGAGTATTGATGAGTCTCCTAGCTCGCCTCTTAGGTTGTGGATTTCAGGATATGCTTTACAGTGTGTTGTTCATGTTGTGTGTGTTTGTTTCGAGTTTCGAAGACGGATGCAGGTGAGGGAACAGTTGATTATCAACGGTGGTAACGCGGTTGGGGGCGGTGGTAGTGGCAGTGGGGATTTGGGCTTTGATTCAATGGATAATTCTGGACAGTATGTCAATTTGGAACAGAACGGGGATGGTGGTTATGGTTCTACAAGCATGGCAAAGCATTTGGAATCAGCCAACACAATGTTCTCTTTTATTTGGTGGGTCATCGGATTCTATTGGGTATCAGCTGATGGTCAAGATTTGATCCATGATTCTCCTAAGCTTTACTGGTTATGTATTGTCTTCCTGGGTTTTGATGTTCTCTTTGTCGTTTTCTGTATTGCGCTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCGCTTCTCTATGCAGTTGCAGACCAGGAAGGGGCAACAAAGGAAGACATTGAGCAGTTgtcaaaattcaaattccaaAGAAAAAGTAAGGAGAAGCTTGCTGGTAATACACAAGGACCTGTTGGAGGAATAATGATTGAATGTCAAGCTGATTCCCCAATTGAACGCGTGCTTGATGATGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCCTATGATGACGGGGTTGAACTAAGACAACTTCCTTGCGGTCACCATTTTCACTGTACCTGTGTGGACAAGTGGCTGCACATCAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAAGTAGCAGACATGGTGAAGAGGAAGTATAG 1161 0.4522 MATTRSPNRSSDETTDPTPLIGSSSDESNSGRRVLRAPSLQQAARFLRQASGRRLMREPSMMVRETAAEQLEERQSDWAYSKPVVILDILWNFAFIVAAVAVLILSIDESPSSPLRLWISGYALQCVVHVVCVCFEFRRRMQVREQLIINGGNAVGGGGSGSGDLGFDSMDNSGQYVNLEQNGDGGYGSTSMAKHLESANTMFSFIWWVIGFYWVSADGQDLIHDSPKLYWLCIVFLGFDVLFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGATKEDIEQLSKFKFQRKSKEKLAGNTQGPVGGIMIECQADSPIERVLDDEDAECCICLSAYDDGVELRQLPCGHHFHCTCVDKWLHINATCPLCKYNILKSSRHGEEEV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02486 386 PANTHER TARGET OF ERK KINASE MPK-1 3 386 - -
Tsu04g02486 386 MobiDBLite consensus disorder prediction 1 36 - -
Tsu04g02486 386 Pfam Ring finger domain 330 372 IPR001841 -
Tsu04g02486 386 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Tsu04g02486 386 CDD RING-H2_RNF111_like 330 374 - -
Tsu04g02486 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 385 IPR013083 -
Tsu04g02486 386 SMART ring_2 331 371 IPR001841 -
Tsu04g02486 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 386 - -
Tsu04g02486 386 SUPERFAMILY RING/U-box 321 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02486 Tsu-Chr4 28077247 28086159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02486 18 381 C3H Transcription Factor Family AT1G68070 48.238 2.67e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02486 - - gmx:100779757 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02486 04 28077247 28086159 Tsu05g00297 05 2182336 2188267 PCT