Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02485 ATGGCATCATCATCCTCACGCAGCAACAGCGCCAACTACGACGTACCGTGGGTTGAGAAGTACCGTCCTAGCAAGATCGTCGACATCGTCGGCAATGAAGACGCCGTCTCCCGTCTCCAAATCATCGCACGTGACGGCAACATGCCTAATCTCATTTTATCAGGTCCTCCTGGAACTGGAAAAACCACTAGTATTCTCGCCCTTGCTCATGAGCTTCTCGGTCCCAATTACAGAGAAGCTGTTCTCGAACTCAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAACAGAAAGCAACGCTTCCTCCAGGCCGACACAAAGTTGTTATACTTGATGAAGCTGACAGCATGACATCTGGAGCACAACAAGCTTTGAGAAGGACAATGGAGATATATTCTAACTCTACTCGTTTCGCGCTTGCTTGCAATACATCTTCTAAGATTATTGAGCCGATTCAGAGTAGGTGTGCCATTGTGAGATTTTCGCGATTATCTGATCAAGAGATACTTGGTCGCCTCATGGTTGTGGTTCAGGCTGAGAAGGTTCCCTATGTTCCCGAAGGACTTGAGGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGGATTGAACAACTTGCAAGCGACATTCAGTGGGTTCCAGTTTGTTAACCAAGCAAATGTTTTTAAGGTTTGTGACCAGCCGCATCCACTGCATGTTAAGAATATGGTGCGCAATGTGATTGAAGGGAATTTCGATGAGGCTTGTTCGGGGCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACCACGCTTTTTCGTATCATAAAAAGTTATGACATGGCGGAGTACTTGAAACTGGAATTCATGAAGGAAACTGGATTTGCTCATATGAGGATTTGTGACGGAGTTGGTTCTTATCTTCAAATGTGTGGTCTGTTGGCCAAGCTTTCTCTTGTTCGCGACACTGCTAAAGCTGCTTGA 1002 0.4561 MASSSSRSNSANYDVPWVEKYRPSKIVDIVGNEDAVSRLQIIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQQKATLPPGRHKVVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRDTAKAA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02485 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 327 IPR008921 GO:0003677|GO:0006260
Tsu04g02485 333 Gene3D - 173 236 - -
Tsu04g02485 333 CDD HLD_clamp_RFC 172 234 - -
Tsu04g02485 333 Pfam ATPase family associated with various cellular activities (AAA) 51 169 IPR003959 GO:0005524|GO:0016887
Tsu04g02485 333 SMART AAA_5 47 173 IPR003593 -
Tsu04g02485 333 CDD AAA 30 167 - -
Tsu04g02485 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
Tsu04g02485 333 Gene3D - 8 172 IPR027417 -
Tsu04g02485 333 Coils Coil 327 333 - -
Tsu04g02485 333 PANTHER REPLICATION FACTOR C SUBUNIT 2 6 331 - -
Tsu04g02485 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 234 IPR027417 -
Tsu04g02485 333 Gene3D - 237 328 - -
Tsu04g02485 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02485 Tsu-Chr4 28070085 28074054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02485 1 332 Core DNA Replication Machinery Family AT1G63160 90.361 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02485 K10755 - rcu:8265440 617.461