Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02484 atGGGAAAAGCATCACGCTGGTTTCGTGGTCTTCTCGGTCTCAAAAAATCTGAACAAAACTCTTCTGATCATAAACCACCTAAAGAGAAACGTCGATGGAGTTTCGTCAAATCATACAGAgaagatcaacaacaacatcacaaCAGCCACGTCACCGTACAAACAGAACATGCTGAAAATAACAACAACGGCAACAAACAAGCCATAGCTGTCGCTGCTGCCACCGCAGCAGCGGCGGAAGCCGCCGTAGCCGCTGCTCAAGCTGCTGCCGCTGTCGTCAGATTCAATTATAGCAGTAACGGAATCGTCAGGATACGCGAACAATGGGCTGCCGTTAAGATCCAATCTGCTTTTCGAGGAAGTTTGGCGAGAAAGGCGCTCCGAGCATTGAAAGGGCTGGTGAAGCTACAGGCATTGGTGAGAGGTCACATTGAGCGGAAACGAACAGCAGCGTGGCTCAAAAAAATGCAATCACTTTTACGGGCACAGGCGCGATATAATGCAGCACGGACTCTGCAAACCTCACATTCGAATGTAAAATCTTCTACATTCCACCTCTACGGTCCTCCAACACCAGAAAAATCTGAAGAAAGTCCTGTTAGATCTAGGAGCATGAAATCTGAGCATTCACCACTCAAgAGAAACAGTTCCAAATCATGTCTCTCAATCAGTGGCAATTTATCAGAGAATCAGCTAGATGAACAATCATGGAATAGAGTAAGATCACTGATAAGAAATTATAGCAGGAGCGACGAAAAACACGATAGGATTGTTGAAATTGATTCAGGAAAACAAAACATGACTACGAAACGTAGAAACCTCTTTCACTCCATCAGCGATACTGATCACTATTATTATAGTCAGAATTTGACCCCTACAAAAGAATCAAAATCCCATGGTCAAAGTCAATCTTGTGAGGTTCAATCTTATTACAATCCACTCAAACTCAACGAAGTTGAAGAGAGCTCGTTTTGCACCGCAAACAATAGTCCTCAATTTTTATCCGCTACTTCAAAAGACGATGGCTACAAAAGAAGCCCTTTTACTCCTACTAGAAGTGACGGCTCAAGAAACTGCCTTAAAGGCTATTCTGATTACCCAAGTTACATGGCTTATACAGAATCATCAAAGGCAAAAGTTAGATCTTTGAGTGCACCAAAACAAAGGCCTCAATTTGAGAAATCTGGTTCATCTAATAGGTACTCACTGAATGGACATGACATGGCTAGATTGGCTACAATGCGAACATCTGCATTGCAAGCAAGCTTCACTAGTAAAGGGTATCCTGGTTCTGGTCGTTTGGATAAGCTTGGAATGCCTGTGGGGTATAGATGA 1335 0.4255 MGKASRWFRGLLGLKKSEQNSSDHKPPKEKRRWSFVKSYREDQQQHHNSHVTVQTEHAENNNNGNKQAIAVAAATAAAAEAAVAAAQAAAAVVRFNYSSNGIVRIREQWAAVKIQSAFRGSLARKALRALKGLVKLQALVRGHIERKRTAAWLKKMQSLLRAQARYNAARTLQTSHSNVKSSTFHLYGPPTPEKSEESPVRSRSMKSEHSPLKRNSSKSCLSISGNLSENQLDEQSWNRVRSLIRNYSRSDEKHDRIVEIDSGKQNMTTKRRNLFHSISDTDHYYYSQNLTPTKESKSHGQSQSCEVQSYYNPLKLNEVEESSFCTANNSPQFLSATSKDDGYKRSPFTPTRSDGSRNCLKGYSDYPSYMAYTESSKAKVRSLSAPKQRPQFEKSGSSNRYSLNGHDMARLATMRTSALQASFTSKGYPGSGRLDKLGMPVGYR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02484 444 Gene3D - 105 158 - -
Tsu04g02484 444 PANTHER CALMODULIN BINDING PROTEIN IQD22 1 440 - -
Tsu04g02484 444 SMART iq_5 106 128 IPR000048 GO:0005515
Tsu04g02484 444 SMART iq_5 129 150 IPR000048 GO:0005515
Tsu04g02484 444 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Tsu04g02484 444 Pfam IQ calmodulin-binding motif 134 148 IPR000048 GO:0005515
Tsu04g02484 444 Pfam IQ calmodulin-binding motif 109 128 IPR000048 GO:0005515
Tsu04g02484 444 Pfam Protein of unknown function (DUF4005) 330 411 IPR025064 -
Tsu04g02484 444 MobiDBLite consensus disorder prediction 1 31 - -
Tsu04g02484 444 ProSiteProfiles IQ motif profile. 131 158 IPR000048 GO:0005515
Tsu04g02484 444 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Tsu04g02484 444 MobiDBLite consensus disorder prediction 173 221 - -
Tsu04g02484 444 MobiDBLite consensus disorder prediction 381 403 - -
Tsu04g02484 444 MobiDBLite consensus disorder prediction 196 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02484 Tsu-Chr4 28056380 28060236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02484 108 444 IQD Protein Family AT4G23060 45.198 1.37e-66 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02484 - - gmx:100793587 492.656