Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02482 ATGGCGAGACCTAATCAAGAGACGATTGATACATTCATCAGCATCACCGGTGTATCTGAACCAATCGCACTTCAAAAACTCGAGGAGCATGGTGGTAGTCTTAATGAAGCTGTAAATGCATATTTTAGCGAAGGAGACAGAAATTTGATGACCAGCTCTGCTGCAGTTCCTCAAGGGGATTTCATGGATATAGATGATCAACGCGAGGATGAAATTCATAGACCTCCATCTCTTTTATCTTTAGCAAGAAATCTCGATCCATTTTCTCTTCTTGATCCTACAAGAAGTTCTCTTCTTGATCCTACAAGAAGTATATTTGATACTCATCTTggtgcaacaaaccagacgcCGTTTGTAACACATCCAAGAGAGGTAAGGGAAATTCCGATAGAGGTTAAGGATGGTAGTCAATCCACTCCTCAAGCTGGCCATATTCCAATCGTTGAAGATGTCACTGGAACTGTTCATGCCCAAGGCCCAGATATACATGGGAGTGTCATAATACTTGATGATGACGATGACGATGACAATACCCCACCTGCTCAGACTCATTCTTCACCTGACAGGATTGCGAGACCTAGTGCTCCCAACTTTGAGAATTTACCAGATAATAGTAGCAATGACATAGAAGAAGAAATGATTCGTGCAGCCATTGAGGCATCCAAACGGGAGGCTGAGGAAAATTACAGCAATCACGAACTTGGCAGACAAACTGACTCGAGTGAATCTGGGCCTAATCCAAGGCAAACATTTATAGAGGATCCTGAGCTTGCCCATGCAGTTTCATTGTCCCTGAGGACAGCAGAGCAAGAAAAAGCACGGCGTGTACAAGAAGGTGATGTTGGAGGACCTACAGCAGGGCCATCTAAGGCACCAGAAGTTGAATTAGGGGAAGTATCTTCAAATGGAAGATTGCAGGCAGGAAGCTTATCCTttaaagatgaagatgaagatataGAGGAGATGCCTTTGGTTAGGAACAGGTCTAGACATGTGTCACTTACCTCCACAGGATCGGGCAAAGAGGCTGAATTTATCGAGTCTAGCACAGTGGCAAGCACAGCAGTTGAGGAAAGCAACAGTCCTCCTGAGCAAAACGACAGTTCCTTCCACTCTCATGAATGGGGGGGCATTTCTTCTGTAGAGCATGATGAAGCAGTAATGCTTGAGGCCGCAATGTTTGGTGGAATCCCGGAAGGAAGTAGTTATCGCCATGCTTATGCACCACACGAGTTCATGCAGAATAGGGGTTTCCATCCCCAGCCCGCACCTCTTGCATATCGCCCACCTTCACCATCATTGGAGGCTCAACGCTTGATAAGGGAACAACAGGATGATGAATATCTTGCATCATTACAAGCAGACAGAGAAAAAGAATTGAAGGCCATAGAGGAGGCTGAGGCTGCTCGTGAAGAGGAAAGACGGAGAGCAGAAGAATCTCACAAGAAATTACAGGAAGAGCGGGAATTGGAAGCACAGTTAGCTGCCAAAGAAGTCTCTCTACCACCTGAACCATCCTCAAATGATGATAATGCTGTGAACCTGCTGGTAAAAATGCCAGATGGCAGCCGTCGTGGGCGTCGATTCCTAAGATCTGATAAGCTCCAGTCCCTTTTCGACTTCATAGATATTGGTAGACAGGTGAAACCAAGCAGTTACAGACTGGTGAGACCATATCCTAGGCGTGCCTTTGGTGTTGAAGAAAGTGCTGTGACACTGGATGAACTTGGCCTAACCAACAAGCAAGAAGCTTTGTTTTTAGAacatgaacaacaacaacaacaacaacctcaacaaaatcaacaaaatttagtgttttttttcaTCTGGGAATTGTTCATCAGCCACAAATTTCAAGGTCTACCATCAATGAGCACACAGAGATTGGATTTACCTTGTAGCTTTCCTCGGAAAGACAGTTCTTCGCGTTCGCAGCAGACATTGAGGCCGGTCGGGGTATCAGTGGAGAAGACTGAAGTCAAGAACAGCAACAACAGCAGTAGTACTTGTTCTCTGCAGCAGAACATTCGGTTACCGCCTTTAGCAACGACAGCTCAGACATTGGGAGAGATTAAGGATGAGGAATTTTGGGAGAAAGGTGGGGGGAGGAGTTTGAAGAGGCTTGCAGAACATGGATCTTTGGATGAGTCTTTTACTAATAGGGTTAAGAGGAAAAAGGGTAATAGTGGTGATGAgaattttgatgaatttgaaaggGAAAGTTTCAGTTTGGCACAATTTAGTGCTGGGAATTTTTGGTCTGTTCATGGTTTTGGAGGGTTTAATAATAGCCCTTCACTTCCTTTCTCTTTGAATTGTTCTGGAGATGAGGAAAGGGTTTGTTTTGCTCCTGCTGAAGTTGTTTCTGCACCTTTGCCTTTGTCTAACAATCCTTGGCTTGAATCTGCTGTAACAAAGATCACCAATTTTGGTGAAGGTAGCCACcagcatcaacatcatcatGTCAACGAAGGTTCGGTTTCTAATGGTTCATCGGAAAGCCAGAGTTTGAGTCTGAGGTTGAATGAGAATGCATCAGAACATGAAGATGGTAATGGTTCAGGGAATCCTTATCAGCATGAAGGAACTGAAGTGGAAACAggagaagaggatgaagaagagGAGCATCGCGGATTTGAGCTTTTGAGTTTGCTTACTGGTTGTGTTGATGCTATTGGATCAAGGAATGTTGCTGCAATCAACCATTTCATTGCAAAATTGGGTGATCTTGCATCTCCAAGAGGAACCTCCATAAGCCGAATTTGTGCTTATTATACAGAAGCCTTAGCAATCAGAGTTACCAGGCTTTGGCCTCATGTTTTTCAAATCACAGCCACTACTCGCGATTTCGATAGGGTGGTGGATGACGATGAAATGATCACTGCATTGAGGCTTCTTAACCAGGTTACTCCAATTCCGAAGTTTCTCCATTTCACATCAAATGAGATGCTGTTGAGGGCTTTTGAAGGGAAAGAAAGGGTTCACATTATAGACTTTGACATAAAGCAAGGACTTCAATGGCCTAGCTTGTTCCAAAGTTTAGCTTCAAGGACTAATCCTCCAAGCCATGTTCGAATCACAGGCGTGGGGGAATCGAAGCAAGAGTTGAACGAAACCGGAGACAGACTAGCAGGGTTTGCTGAGGCCTTGAACCTTCCCTTTGAGTTCCATCCTGTGGTGGATAGACTTGAAGATGTGAGGCTTTGGATGCTTCATGTGAAGGAACATGAAACTGTCGCTGTGAACTGTGTCATGCAGCTTCATAAGATCCTTTATGATGGTAGTGGAGGAGCATTGAGGGACTTTTTGGGTCTCATTCGCAGCACAAATCCTACAATGGTGGTTATGGCAGAGCAAGAAGCGGAACACAACGAGGCGAGGTTGGATTCAAGAGTGTGCAATTCGCTGAAATATTACTCAGCACTGTTTGATTCAATTGATCACAGTGGCCTTCCACTGGAGAGTCCAATGCGGATCAAGATAGAGGAAATGTTCGCTAGGGAGATAAGGAACATCATTGCTTGTGAAGGAAGGGACAGGTTGGAGAGGCACCGGAGTTTTGGAAATTGGAGGAAGATGATGGTGGAGTATGGAGGGTTTCGATGCATGGGAGTCACTGACAGGGAAATGATTCAGAGCCAGTTTCTGTTAAGAATGTATTCTTGTGATAATTACAGTGTTCAGAAGCAGGAGCAAGAAGGAGCAACGGCACTTACTTTGGGTTGGCTCGATCAACCTCTCTACACAGTATCGTCTTGGGCACCGGTTGACACGGCTGGAAGCTCGTCCTCTTTTTCTCAGGCAGCTTGA 3810 0.4325 MARPNQETIDTFISITGVSEPIALQKLEEHGGSLNEAVNAYFSEGDRNLMTSSAAVPQGDFMDIDDQREDEIHRPPSLLSLARNLDPFSLLDPTRSSLLDPTRSIFDTHLGATNQTPFVTHPREVREIPIEVKDGSQSTPQAGHIPIVEDVTGTVHAQGPDIHGSVIILDDDDDDDNTPPAQTHSSPDRIARPSAPNFENLPDNSSNDIEEEMIRAAIEASKREAEENYSNHELGRQTDSSESGPNPRQTFIEDPELAHAVSLSLRTAEQEKARRVQEGDVGGPTAGPSKAPEVELGEVSSNGRLQAGSLSFKDEDEDIEEMPLVRNRSRHVSLTSTGSGKEAEFIESSTVASTAVEESNSPPEQNDSSFHSHEWGGISSVEHDEAVMLEAAMFGGIPEGSSYRHAYAPHEFMQNRGFHPQPAPLAYRPPSPSLEAQRLIREQQDDEYLASLQADREKELKAIEEAEAAREEERRRAEESHKKLQEERELEAQLAAKEVSLPPEPSSNDDNAVNLLVKMPDGSRRGRRFLRSDKLQSLFDFIDIGRQVKPSSYRLVRPYPRRAFGVEESAVTLDELGLTNKQEALFLEHEQQQQQQPQQNQQNLVFFFIWELFISHKFQGLPSMSTQRLDLPCSFPRKDSSSRSQQTLRPVGVSVEKTEVKNSNNSSSTCSLQQNIRLPPLATTAQTLGEIKDEEFWEKGGGRSLKRLAEHGSLDESFTNRVKRKKGNSGDENFDEFERESFSLAQFSAGNFWSVHGFGGFNNSPSLPFSLNCSGDEERVCFAPAEVVSAPLPLSNNPWLESAVTKITNFGEGSHQHQHHHVNEGSVSNGSSESQSLSLRLNENASEHEDGNGSGNPYQHEGTEVETGEEDEEEEHRGFELLSLLTGCVDAIGSRNVAAINHFIAKLGDLASPRGTSISRICAYYTEALAIRVTRLWPHVFQITATTRDFDRVVDDDEMITALRLLNQVTPIPKFLHFTSNEMLLRAFEGKERVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGVGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEHETVAVNCVMQLHKILYDGSGGALRDFLGLIRSTNPTMVVMAEQEAEHNEARLDSRVCNSLKYYSALFDSIDHSGLPLESPMRIKIEEMFAREIRNIIACEGRDRLERHRSFGNWRKMMVEYGGFRCMGVTDREMIQSQFLLRMYSCDNYSVQKQEQEGATALTLGWLDQPLYTVSSWAPVDTAGSSSSFSQAA 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02482 1269 Pfam UBX domain 508 588 IPR001012 GO:0005515
Tsu04g02482 1269 MobiDBLite consensus disorder prediction 234 248 - -
Tsu04g02482 1269 Gene3D - 202 279 - -
Tsu04g02482 1269 MobiDBLite consensus disorder prediction 823 861 - -
Tsu04g02482 1269 Gene3D - 509 591 - -
Tsu04g02482 1269 CDD UBX 514 588 - -
Tsu04g02482 1269 ProSiteProfiles UBX domain profile. 508 586 IPR001012 GO:0005515
Tsu04g02482 1269 MobiDBLite consensus disorder prediction 223 254 - -
Tsu04g02482 1269 Gene3D - 1 45 - -
Tsu04g02482 1269 SMART ubx_3 505 589 IPR001012 GO:0005515
Tsu04g02482 1269 Coils Coil 449 494 - -
Tsu04g02482 1269 Pfam GRAS domain family 882 1253 IPR005202 -
Tsu04g02482 1269 SUPERFAMILY UBA-like 2 44 IPR009060 GO:0005515
Tsu04g02482 1269 CDD UBA_Ubx1_like 6 42 - -
Tsu04g02482 1269 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 210 228 IPR003903 -
Tsu04g02482 1269 MobiDBLite consensus disorder prediction 329 375 - -
Tsu04g02482 1269 PANTHER SCARECROW-LIKE PROTEIN 28 615 1258 IPR030027 -
Tsu04g02482 1269 SUPERFAMILY Ubiquitin-like 471 588 IPR029071 -
Tsu04g02482 1269 Pfam UBA-like domain 6 46 - -
Tsu04g02482 1269 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 615 1258 IPR005202 -
Tsu04g02482 1269 MobiDBLite consensus disorder prediction 165 207 - -
Tsu04g02482 1269 MobiDBLite consensus disorder prediction 812 876 - -
Tsu04g02482 1269 SMART uim 209 228 IPR003903 -
Tsu04g02482 1269 SMART uim 252 271 IPR003903 -
Tsu04g02482 1269 ProSiteProfiles GRAS family profile. 872 1254 IPR005202 -
Tsu04g02482 1269 MobiDBLite consensus disorder prediction 268 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02482 Tsu-Chr4 28022398 28032224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02482 624 1253 GRAS Transcription Factor Family AT1G63100 55.354 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g02482 GRAS 4.7e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02482 - - tcc:18606459 872.848