Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02477 ATGTCTTCTTCATcgtcatcatcttcttccaaaAGGCACCCAATATACCATGGCATTCGAAGCCGATCAGGAAAATGGGTGACTGAAATCCGTGAGCCTCGGAAGACAAACCGCATATGGTTAGGCACATTTTCCACCCCTGAGATGGCCGCTGCGGCTTATGATGTCGCGGCTTTGGCTCTCAAAGGCAGGGAAGCTGTTCTAAACTTCCCTGCCTATGTTGGTAGGTATCCGGTGCCAGCGTCCAATTCATCGGATGACATCCGTGCCGCTGCCACTGCTGCAGCTGAATTAATGAAGGGTGATGCCTTTAATGGTGTTGGCTTTGATGTTAGTCCTTTGTATGAAACTGAGTTCCTTGATGAGGAAGCTATATTCTCCATGCCAAGATTGATGGTAGAAATGGCTGAGGGAATGCTGCTTTCTCCTCCCAGAATGAATCCACCACCGTCTGAGTACTTGCCTGAATATTACACTTTGGGAGAAAATTTGTGGAACTATTaa 504 0.4563 MSSSSSSSSSKRHPIYHGIRSRSGKWVTEIREPRKTNRIWLGTFSTPEMAAAAYDVAALALKGREAVLNFPAYVGRYPVPASNSSDDIRAAATAAAELMKGDAFNGVGFDVSPLYETEFLDEEAIFSMPRLMVEMAEGMLLSPPRMNPPPSEYLPEYYTLGENLWNY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02477 167 ProSiteProfiles AP2/ERF domain profile. 15 71 IPR001471 GO:0003700|GO:0006355
Tsu04g02477 167 PANTHER ETHYLENE RESPONSE FACTOR 4 167 - -
Tsu04g02477 167 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Tsu04g02477 167 Pfam AP2 domain 18 63 IPR001471 GO:0003700|GO:0006355
Tsu04g02477 167 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Tsu04g02477 167 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Tsu04g02477 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 167 - -
Tsu04g02477 167 SMART rav1_2 15 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02477 Tsu-Chr4 27980013 27980592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02477 10 167 AP2-EREBP Transcription Factor Family AT5G52020 55.172 4.20e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g02477 AP2 9.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02477 - - gmx:100778793 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02477 04 27980013 27980592 Tsu04g02477 04 27980013 27980592 ECH