Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02476 ATGATGAAATCATTATCACTTGATGAGTCTAATTACCCTTCATACTACGAAAATTCAAGCTCATCATCGGAAGCAAGTTGCTATGAAGAAATCTTGTTAGCGTCGGAGCAACCAAAGAAGCGAGCTGGGAGAAGAAAATTCAAGGAAACAAGACATCCAGTGTATAGAGGAATAAGAAGGAGGAACAATAACAAATGGGTTTGTGAAGTTCGTGTTCCTAACGACAAATCCACGAGGATTTGGTTAGGAACATATCCAACACCTGAAATGGCGGCACGTGCACATGATGTTGCTGCTTTGGCACTTCGTGGAAAATCAGCTTGTCTTAATTTTGCTGATTCGGCTTGGCGGTTGCCGTTGCCTTCGTCGACTGATCCGAAGGAGATTAGGAAAATGGCGGCGGAAGCTGCTTTGGCATTTGCTGTTGAAGATGGGACTATGTGTGAAAGTTCCAGAGCTGGAGCAGGACATGTTGCATGA 480 0.4417 MMKSLSLDESNYPSYYENSSSSSEASCYEEILLASEQPKKRAGRRKFKETRHPVYRGIRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPSSTDPKEIRKMAAEAALAFAVEDGTMCESSRAGAGHVA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02476 159 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g02476 159 SUPERFAMILY DNA-binding domain 54 114 IPR016177 GO:0003677
Tsu04g02476 159 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Tsu04g02476 159 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Tsu04g02476 159 Pfam AP2 domain 53 104 IPR001471 GO:0003700|GO:0006355
Tsu04g02476 159 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Tsu04g02476 159 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tsu04g02476 159 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Tsu04g02476 159 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 146 IPR045277 GO:0003700
Tsu04g02476 159 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 5 146 - -
Tsu04g02476 159 CDD AP2 55 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02476 Tsu-Chr4 27964866 27965455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02476 33 146 AP2-EREBP Transcription Factor Family AT5G51990 75.439 1.48e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g02476 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02476 - - gmx:100779318 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02476 04 27964866 27965455 Tsu05g00309 05 2297574 2298436 PCT