Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02472 ATGAGTGCGTTTGGACCGTTGGATCTTCATGAATCGTGGCCTTTGGATCAAAGCAAAGGTCCAGATCTCATTGGCGCCCCTTTGCATCATGCGGACGTGCTCGTAGGTGTTATGGCTGAGGAACAAGCTCCAGCATCGACTTCGAATGTGGACGGGGACGATTATGCGTGGGTGGCCGACGAGCCGAGGAACACTATTTCGAAGTATTCTCTGAATGGCGGGGAGGGGATATTTCGTACAATTCAGCGTTCCCCGGCAACTGATTGGAAGTTATGCATACCGAACACCAGTCGCCGTATTTGCAGCAAATTTCAATGGGGATCTTTCCCCATGTATCAAATTGCCTTCGAGCAAATGGGTTATAGGCTTCCTTTCAGCGACTTCGAAGTCGCGATTCCTTGTTTCCTTCCAAGAATACTATTCATTTTTGTCAGTTCATTCAGATCTCATTTATCAAAAATGGTGAGAGGAAAAACTCAAATGAAGAGAATTGAAAATGAGTCAAATAGACAAGTAACTTTCTCAAAGAGAAGAAATGGGTTGCTTAAAAAAGCTTTTGAACTTTCAGTTCTTTGTGATGCTGAAGTAGCACTCATCGTTTTCTCTACCACTGGGAAACTCTATGAGTTTTCAAGTACTTCAAGCATAAACAAAACAGTGGAACGCTATCAAAGAAAAGTCAAAGATTTGGCTCTCGGCATCATAGGAGTTCAAGAAAATACACAGCACCTAAAGGAATGTGATATCAACACGACAAAGAAGTTGGACCATCTAGAACTATCCAAAAGGAAGCTATTGGGAGATGAATTGGATACATGTGCTATTGATGAATTGCAAAAGATTGAAAATCAACTTGAACGCAGCTTAAGCAAAATTAGGGCAAGAAAGGATCAATTGTTCAAGGAACAAATGGAAAAGCTAAGAGAAAAGGAAATGTActtacttgaagaaaataaacgCTTATTTGAGCAGTATGGAATTGAACAAGATGGTTGTCTAAGTAAAGAACAAGATATCGAACTTGTAATAGAGAGTGTGGAAGGCGAGGAGGAGGTGGAGACGGAGTTGTTCATAGGGCGACCCGAGAAACGAATGCATTGA 1101 0.4105 MSAFGPLDLHESWPLDQSKGPDLIGAPLHHADVLVGVMAEEQAPASTSNVDGDDYAWVADEPRNTISKYSLNGGEGIFRTIQRSPATDWKLCIPNTSRRICSKFQWGSFPMYQIAFEQMGYRLPFSDFEVAIPCFLPRILFIFVSSFRSHLSKMVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSTSSINKTVERYQRKVKDLALGIIGVQENTQHLKECDINTTKKLDHLELSKRKLLGDELDTCAIDELQKIENQLERSLSKIRARKDQLFKEQMEKLREKEMYLLEENKRLFEQYGIEQDGCLSKEQDIELVIESVEGEEEVETELFIGRPEKRMH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02472 366 ProSiteProfiles K-box domain profile. 241 331 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g02472 366 PRINTS MADS domain signature 156 176 IPR002100 GO:0003677|GO:0046983
Tsu04g02472 366 PRINTS MADS domain signature 191 212 IPR002100 GO:0003677|GO:0046983
Tsu04g02472 366 PRINTS MADS domain signature 176 191 IPR002100 GO:0003677|GO:0046983
Tsu04g02472 366 ProSitePatterns MADS-box domain signature. 156 210 IPR002100 GO:0003677|GO:0046983
Tsu04g02472 366 Pfam K-box region 243 324 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g02472 366 Gene3D - 166 231 IPR036879 GO:0003677|GO:0046983
Tsu04g02472 366 CDD MADS_MEF2_like 156 224 IPR033896 GO:0000977|GO:0045944
Tsu04g02472 366 SMART madsneu2 154 213 IPR002100 GO:0003677|GO:0046983
Tsu04g02472 366 PANTHER MADS BOX PROTEIN 154 361 - -
Tsu04g02472 366 PANTHER MADS-BOX PROTEIN SOC1 154 361 - -
Tsu04g02472 366 Coils Coil 275 302 - -
Tsu04g02472 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 163 210 IPR002100 GO:0003677|GO:0046983
Tsu04g02472 366 ProSiteProfiles MADS-box domain profile. 154 214 IPR002100 GO:0003677|GO:0046983
Tsu04g02472 366 SUPERFAMILY SRF-like 156 226 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02472 Tsu-Chr4 27922357 27936039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02472 154 364 MADS-box Gene Family AT4G22950 55.660 1.42e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu04g02472 K-box 2.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02472 - - mtr:MTR_4g102530 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02472 04 27922357 27936039 Tsu04g02472 04 27922357 27936039 ECH
Tsu04g02472 04 27922357 27936039 Tsu08g01222 08 13520196 13529188 ECH
Tsu04g02472 04 27922357 27936039 Tsu04g01690 04 17899866 17906833 ECH