Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02470 ATGGCTTCAATTTATCAATCTTGTAGCTTGTTGAATACAATTACAATTACATTGATGCTTATAATCATTGGAAAGCCAGCTCTAGTCATGGGCACATTTCAACCTAGTCGGTGGACCCCTGCTCATGCAACATTTTATGGTGACGACACAGCTTCCGCCACCATGGgaGGAGCATGTGGGTATGGAAATTTGTTTGTGAATGGATATGGGACAGACACAGCAGCATTGAGTTCAACATTGTTTAATAATGGATATGCATGTGGGACTTGTTATCAAATAAAATGTGTCCAATCGAGTGCATGTAACACTAACGTGCCTTATACTACAGTCACTGCTACAAATCTTTGCCCCCCAAATTGGTCTGAGTCCTCTGATAATGGTGGATGGTGCAACCCACCACGTTCACATTTTGATATGTCTAAGCCTGCTTTCATCAAAATTGCACAGTGGAAGGCTGGTATTGTCCCTATTCAGTATCGCAgAGTACCTTGTGCAAAGAGTGAAGGGTTACGGTTCTCTTTCCAAGGAAATGGGTATTGGCTATTAGTGTACGTGATGAATGTGGGAGGTGGAGGAGATATTGCAAACATGTGGGTGAAAGGAAGCAAAACAGGATGGATTAGTATGAGTCACAATTGGGGAGCTTCTTACCAAGCATTTGCAACACTTAGTGGCCAAACTCTTTCTTTTAAGGTTACTTCTTACACAACCAAAGAAACTATAATAGCATTGAATGTTGCTCCTTCTAACTGGGGTCCTGGATTAACCTATTCAACCAAAGTCAACTTCCATTGA 795 0.4138 MASIYQSCSLLNTITITLMLIIIGKPALVMGTFQPSRWTPAHATFYGDDTASATMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACNTNVPYTTVTATNLCPPNWSESSDNGGWCNPPRSHFDMSKPAFIKIAQWKAGIVPIQYRRVPCAKSEGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSKTGWISMSHNWGASYQAFATLSGQTLSFKVTSYTTKETIIALNVAPSNWGPGLTYSTKVNFH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02470 264 Gene3D - 25 165 IPR036908 -
Tsu04g02470 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Tsu04g02470 264 SUPERFAMILY Barwin-like endoglucanases 37 187 IPR036908 -
Tsu04g02470 264 PANTHER EXPANSIN 2 264 - -
Tsu04g02470 264 SUPERFAMILY PHL pollen allergen 168 258 IPR036749 -
Tsu04g02470 264 SMART dpbb_1 73 159 IPR007112 -
Tsu04g02470 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Tsu04g02470 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Tsu04g02470 264 PANTHER EXPANSIN-A15 2 264 IPR002963 GO:0009664
Tsu04g02470 264 Gene3D - 170 264 IPR036749 -
Tsu04g02470 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Tsu04g02470 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Tsu04g02470 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Tsu04g02470 264 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Tsu04g02470 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Tsu04g02470 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Tsu04g02470 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Tsu04g02470 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Tsu04g02470 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Tsu04g02470 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Tsu04g02470 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Tsu04g02470 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Tsu04g02470 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Tsu04g02470 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02470 Tsu-Chr4 27899258 27901263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02470 3 264 Expansin Gene Family AT1G62980 61.832 2.64e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02470 - - gmx:100781459 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02470 04 27899258 27901263 Tsu04g02470 04 27899258 27901263 ECH
Tsu04g02470 04 27899258 27901263 Tsu05g00319 05 2396435 2397777 PCT