Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02465 ATGGGAAGACAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACAGCTGAAGAAGATAAGAAACTCATCAATTTCATTCTTACCAATGGACAATGTTGTTGGCGTGCTGTGCCTAAACTTGCTGGACTTAGGCGTTGCGGTAAGAGTTGTCGTCTTCGTTGGACTAACTATCTTCGTCCTGATTTGAAGAGAGGTCTTCTTACTGAAGAAGAGGAGCAGCTTGTTATTGATCTTCATGCCCGTCTTGGCAACAgGTGGTCGAAGATTGCATCCAGATTACCCGGGAGAACAGATAACGAGATTAAAAATCATTGGAACACCCACATCAAGAAAAAACTCATTAAGATGGGAATTGATCCCATTACTCATGAACCTTTAAATAAACAAGCAGCATCCCAAGATAGTTCATCATCCCCTGCAGAGAATTTGTCACAACCAAGCAAAAACCATGAAGAGAAGGAAATTAGTGGAATTGTCAACTCAGAGGAGAATTCAAGCTCATCACCAACTGAAAATTCTTCTGGAGAAGAATCCCTTTTGCTAGATAGCATTTGTAGTGATGATTCTCTAATGAATAGTCTATGGTTGGATGAAACACCATTGGTTGAAGCACTTTGGGAAATGGACACTACACCTATAGTAGCAGAAACAGATAATACCAAAAATGAGATGAATTTTGTGCCTTTTTGGGAGGATAATTGTTCTTGGCTATTGGATTGTCAAGACTTTGGTATTCAGGATTTTGGATTTAATTGCTTCAATGAGATAGAGTCAAGTACAATGCAAACTATAGGCATGAAGGAAAATATTAAACATTAG 828 0.3901 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEEEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLIKMGIDPITHEPLNKQAASQDSSSSPAENLSQPSKNHEEKEISGIVNSEENSSSSPTENSSGEESLLLDSICSDDSLMNSLWLDETPLVEALWEMDTTPIVAETDNTKNEMNFVPFWEDNCSWLLDCQDFGIQDFGFNCFNEIESSTMQTIGMKENIKH 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02465 275 CDD SANT 16 61 IPR001005 -
Tsu04g02465 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu04g02465 275 Gene3D - 71 159 - -
Tsu04g02465 275 PANTHER PROTEIN ODORANT1-LIKE 2 259 - -
Tsu04g02465 275 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 259 - -
Tsu04g02465 275 MobiDBLite consensus disorder prediction 130 148 - -
Tsu04g02465 275 MobiDBLite consensus disorder prediction 130 180 - -
Tsu04g02465 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu04g02465 275 MobiDBLite consensus disorder prediction 162 180 - -
Tsu04g02465 275 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu04g02465 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu04g02465 275 CDD SANT 71 112 IPR001005 -
Tsu04g02465 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu04g02465 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu04g02465 275 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Tsu04g02465 275 Gene3D - 12 67 - -
Tsu04g02465 275 SMART sant 13 63 IPR001005 -
Tsu04g02465 275 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02465 Tsu-Chr4 27817194 27818860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02465 1 253 MYB Transcription Factor Family AT4G22680 62.547 6.28e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g02465 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02465 K09422 - gmx:100786965 442.195