Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02450 ATGGGGATGGCCCCATTAAGATTGCATTTTCCGGTTACTATGTCAATTAGTAGTTTGAAGTCATTTTTCACAATGAGTAAGCCACCACATCCAGCAAGATCCACATACATATTTCTTATCCAACCTTTCATTGGGACATTTCCCATCAATGCATATGGTATCCAATCGGCGTTATCCTCTAGTAATGTGATAATGCTCACACCCATTGATATGTTTCGCCATCTTGAGGATCACATGAATAGGATCCGCAGGATGTTAGTACCTGTTTTCTGGGTAATGTCGCTAGGCGAGGAAAATCGCCAAGCTTCTAACTTCCACTCGCTAGAGAGTCGTCGGGCGAGAGGTAGCAACGAGTTCGCTAGTTGTCACCAGGACTCGTCAGTTGCTAGGCTAGCTTCTGACTTGTGTTCGCTAGCCTCTAATCAATCCTCAGCCACTTCGGAAAGTATCTCCGACAAGGTTtgtgaagaagagaaaaacgTCAACAACGACGAGGTGACAATGAAGGGGAAGGAAGTTATGATCTCGGAACAACATCAACCGTCAAAAAGCAATGCCAATTTACCTTTTGATTTTGTCAAGCTCTCTAAAGATGATTCGATTCCTAGGTTGAATGTGCAAGAACATGATTTTTTCACCCCCTTGAAGGACTTGGGGGCGAGTTCGTCTTTATTACCCTGGGCTAATAGTAAGCCCAACAATGAAGAGaactcaaaagaaaaatcttctGACTCGAGAAGTGATTTCTCTTGCAACTTTTGTAAGAGACAGTTTTCTACTTCACAAGCTTTAGGAGGGCATCAAAATGCTCATAAGCGTGAACGCGCACTTGCAAAGCATCGTCAAGAGATTCAAAATGGTTTTGGTACCCCTCATTATCCTTTTCCTTACTACACAAGTTATCAGAGCCTTTCTTCATCTTATTATGGAATTGGATCTTATAATAAAGCACTTGGAATTAGGATGGACTCGATGATTCACAAGCCGAGTTATTCGTGGATTCCGCCTCCTTATAAGTTCGGTTCTACTCCTAAGTGGACACCGATGCAAGATATGATCAAAAACTTTTCTTCACTTGATAGATTGAAGATTGAGAGTCTTGATgcaaagaatgaaaacagtGCAACTCCAATTGGGAGGAAGAATAATATGATGAAATTAAATGTTGGAGAGTCTTCTATAAATGTTGATACGAAGTCAAATTCAGACGTAGACAAGTCAACTGTGGTTGTCGTGGGTAGCGATCATGATGCGGATAAGAAAGAAGCCTCCGATTCTGAATCTACCGGGCTTGATTTGTCACTTAAGCTTTGA 1314 0.4018 MGMAPLRLHFPVTMSISSLKSFFTMSKPPHPARSTYIFLIQPFIGTFPINAYGIQSALSSSNVIMLTPIDMFRHLEDHMNRIRRMLVPVFWVMSLGEENRQASNFHSLESRRARGSNEFASCHQDSSVARLASDLCSLASNQSSATSESISDKVCEEEKNVNNDEVTMKGKEVMISEQHQPSKSNANLPFDFVKLSKDDSIPRLNVQEHDFFTPLKDLGASSSLLPWANSKPNNEENSKEKSSDSRSDFSCNFCKRQFSTSQALGGHQNAHKRERALAKHRQEIQNGFGTPHYPFPYYTSYQSLSSSYYGIGSYNKALGIRMDSMIHKPSYSWIPPPYKFGSTPKWTPMQDMIKNFSSLDRLKIESLDAKNENSATPIGRKNNMMKLNVGESSINVDTKSNSDVDKSTVVVVGSDHDADKKEASDSESTGLDLSLKL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02450 437 Gene3D Classic Zinc Finger 231 289 - -
Tsu04g02450 437 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Tsu04g02450 437 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 136 437 - -
Tsu04g02450 437 MobiDBLite consensus disorder prediction 410 427 - -
Tsu04g02450 437 MobiDBLite consensus disorder prediction 395 437 - -
Tsu04g02450 437 PANTHER ZINC FINGER PROTEIN JAGGED 136 437 IPR045320 GO:0003700
Tsu04g02450 437 MobiDBLite consensus disorder prediction 223 246 - -
Tsu04g02450 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 276 IPR013087 -
Tsu04g02450 437 SUPERFAMILY beta-beta-alpha zinc fingers 247 276 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02450 Tsu-Chr4 27662374 27668989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02450 143 330 C2H2 Transcription Factor Family AT5G10970 33.333 4.07e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g02450 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02450 - - cam:101494832 271.937