Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02446 ATGGAGGCTAGTGGCGGTGTTAGTGGTGGTGTTACGGTGGTGGGATCGGATGCTCCGCCGGAGTACCATGTAGCTCCGAGAACCGACAACCAAACTCCGACAACTGGATCGGCGGTTCAGATTACTGCGGTGGTTCAAGGAAGTGTTCCGCCGCAACCTCCACCGCACACGGCGGTGGTCGCGGCGTCGCCGGCAAATACGCCGGTgccagagaagaagaagagaggacGGCCGAGAAAGTATCCACAAGACGGGTCGGCAACGACGGCGCTGTCTCCAAAGCCAATATCTTTGTCTGCTCCATTGCCGCCGGTGATCGATTTCACGGCGGAGAAACGTGCAAAAGTGCGGCCAGTTAGCTCTGTGAGCAAAGCTAAATTTGAGTTGGAAAATATAGGTGAATGGGCCCCTTGCTCAGTTGGTTCTAATTTCACACCCCACATCATTACTGTTAATGCTGGAGAGGATGTTACGATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCAAATGGTGTCATAAAAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGGATTATTTGAAATTCTGTCTTTATCTGGTTCTTTCACGCCAAATGAAACCGGAGGAACGCGAAGCAGATCAGGTGGCATGAGTGTTTCTTTAGCAAGTCCTGATGGACGTGTTGTTGGTGGAGGAGTAGCTGGTCTGTTGGTGGCCGCAAGTCCAGTGCAGGTAGTGGTTGGTAGTTTTATGGCAGGAAACCAACATGAGCAGAAGGCAAGAAATCAGAAACATGATATGATATCAACTGTGACTTCTGCTGCTGTTGTTCCCATCCCTACACTTGATCCAATACCTATTCTATCATCAGTATCTTCTTTTCGCGGAGATAATTGGTCTGCTGTGCAAGCACCAGATGCAAAGGATAAGCCTGCTGCTGACATTAATGTGTCACTTCCTGTAGGCTAG 996 0.4839 MEASGGVSGGVTVVGSDAPPEYHVAPRTDNQTPTTGSAVQITAVVQGSVPPQPPPHTAVVAASPANTPVPEKKKRGRPRKYPQDGSATTALSPKPISLSAPLPPVIDFTAEKRAKVRPVSSVSKAKFELENIGEWAPCSVGSNFTPHIITVNAGEDVTMKVISFSQQGPRAICILSANGVIKSVTLRQPDSSGGTLTYEGLFEILSLSGSFTPNETGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFMAGNQHEQKARNQKHDMISTVTSAAVVPIPTLDPIPILSSVSSFRGDNWSAVQAPDAKDKPAADINVSLPVG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02446 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 259 IPR005175 -
Tsu04g02446 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 329 IPR039605 GO:0003680
Tsu04g02446 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 329 - -
Tsu04g02446 331 MobiDBLite consensus disorder prediction 27 47 - -
Tsu04g02446 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 262 - -
Tsu04g02446 331 MobiDBLite consensus disorder prediction 1 96 - -
Tsu04g02446 331 Gene3D - 146 279 - -
Tsu04g02446 331 CDD DUF296 145 236 IPR005175 -
Tsu04g02446 331 ProSiteProfiles PPC domain profile profile. 141 283 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02446 Tsu-Chr4 27623001 27626715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02446 1 328 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.427 3.45e-118 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02446 - - gmx:100801730 480.715