Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02443 ATGGAATTTGAATCGGAGGTAGCAGCTTACGATTTTTATAACGAGTACAACAAGAAAATGGGGTTCGGTATTCGCCGCGAATATGGAAATAAAAGCAAAATAGATGGAATTCTAACATCCAGAAGATTCACATGCTTCAAAGAGGGTAAACGAGGTGTTGACAAGCGAGATTACTTTACGAAAGACCCTAGAGCAGAAACAAGAACCGGATGTCAAGCACGCATGGTTATTTCACTTGATCGAAAGATTGGAAAATACAAGGTTGTTGACTTTGTTGCTGAACATAATCACATTCTTCAACCGAATGAAGTTCTGGATTCTCGCCTGCTTTTGGAAGCATGCATCGATTTACATGAAGAGGAAAACGAGTTTTTGAGTGCATGGGAAGATTTGCTTGTTGAGCATAATGTTCCAAATGATTCTTGGCTGCATACAATTTTTCGAGTGAAGGAAAAATGGACATGGGCTTATGTTCGGAAAACTTTCACTGCCGGCACTTGCATAAAGGTTTTGGAAGAAGGGGTATACATTGTAACAAATTATGATAATGGTAAAGAGCGGAAAGTAACGGGGAATCTTCTTGATCAAAAGGTTTCTTGTGATTGCCGCAAATTTGAGACACATGGTATCTTATGCAGTCATGCTATAAAAGTTTTGGATGCCATGAATATTAAGCTAATTCCTGAGCATTATATACTAAAACGATGGACAAGAGATGCAAGGTTGGGTAGTAACATGGATTGGAAAGGACAACACATAGATTTGGACATAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCGAATGGTTAAGTTGATAAATAGAGCATCTGAAACTCATGAAACTTACACATTTATGTCCAAAGTTTATGAAGAGTCCGGAAAAATAGTTGAGAATATGTTGGCTAAGAAGTCCACTGATGTAGAATCAATTGGAATACCTCATGTTTCCATATCAATTTCAACCGGAGAAATAGACAACAATGTCGACACTATTGATGTTGGTGGACCAAGAGGCATAAAAAAGAAAGACCGCTTATGTAAGGCTAGAAAAAGACCCACTTCTTGGGTTGAAAAAATGGCAAGAAAGAGAAAGGGAAATCAATTACAGAAAATGAAAAAGTCTGGAAAAAAAAGTTCAATCTCTCCATCTCAACATCATCTAATTGGGACTGCATATCAACATGGGACTGCAAGTCAACATGGAACTGCAAGTCTACATAGTACTGCATATCAGCATGGGGCTGCAAGTCTACATATGAATTTAAGTGAATCTGAAGATATAATTCAGCAAGGGACATAA 1311 0.3791 MEFESEVAAYDFYNEYNKKMGFGIRREYGNKSKIDGILTSRRFTCFKEGKRGVDKRDYFTKDPRAETRTGCQARMVISLDRKIGKYKVVDFVAEHNHILQPNEVLDSRLLLEACIDLHEEENEFLSAWEDLLVEHNVPNDSWLHTIFRVKEKWTWAYVRKTFTAGTCIKVLEEGVYIVTNYDNGKERKVTGNLLDQKVSCDCRKFETHGILCSHAIKVLDAMNIKLIPEHYILKRWTRDARLGSNMDWKGQHIDLDIKAHFMKRYNELCPRMVKLINRASETHETYTFMSKVYEESGKIVENMLAKKSTDVESIGIPHVSISISTGEIDNNVDTIDVGGPRGIKKKDRLCKARKRPTSWVEKMARKRKGNQLQKMKKSGKKSSISPSQHHLIGTAYQHGTASQHGTASLHSTAYQHGAASLHMNLSESEDIIQQGT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02443 436 Pfam FAR1 DNA-binding domain 11 100 IPR004330 -
Tsu04g02443 436 PANTHER OS04G0421700 PROTEIN 176 371 - -
Tsu04g02443 436 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 99 IPR031052 GO:0006355
Tsu04g02443 436 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 176 371 IPR031052 GO:0006355
Tsu04g02443 436 MobiDBLite consensus disorder prediction 362 386 - -
Tsu04g02443 436 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 112 171 IPR031052 GO:0006355
Tsu04g02443 436 SMART 26again6 198 225 IPR006564 GO:0008270
Tsu04g02443 436 Pfam SWIM zinc finger 197 221 IPR007527 GO:0008270
Tsu04g02443 436 ProSiteProfiles Zinc finger SWIM-type profile. 176 223 IPR007527 GO:0008270
Tsu04g02443 436 PANTHER OS04G0421700 PROTEIN 1 99 - -
Tsu04g02443 436 PANTHER OS04G0421700 PROTEIN 112 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02443 Tsu-Chr4 27547788 27550146 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu04g02443 FAR1 1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02443 - K17604 cam:101500125 308.916