Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02442 ATGAATAGTTCTGATAAGACGGTGAATTGTAATAGTAGTGGTCATGAATTTATTGAAATTGACAAGTTTCAAGATGATGGCGTATCCTGGGAGCCTGCAACAGATATGTGTTTTTCTTCCGCGGACGAGGTTAATTCTTTTTATGGAGAGTATGCTTTGAGAAAGGGGTTTGGGTGGAAGATTAGAACATCAAGAAAAGGGCAAGATGGAGAAATATGCTACTTGATTCTAGCATGCTCAAAAGAGAGGCATATTGTCTCAAATGTTCCATGTACATTGAAGACAAATCCGACAAAGGGGAAAAAATGTCCTGCTAGGATGTGTATTAAGATGGAAAAAGATGGATTGTGGTACGTCACAAAATTTGATCCTAGCCATTCTCACGAGTGCAGCCCTACAAAGGCAAGGTTGTTCAAGGCTAACAAGGAAATTAACTTGCATGTGAAGAGGACTATTCAAATGAATGATGATGCAGGAGTGACGATCAACAAGACTTTCCAATCTCTTGTTAAAGATGCGGGGGGGGGGGGGCATGAAAATATATCGTTTTGTGAAAGAGACGTCAAAAATTATGTTAACAAGGAACGTCGTGCAATTGGAAAAGAAGATGTAGACAACGAATTTCATGTAAGAAATGTGTTTTGGGCCGATGCAAGAAGTAGAGCTGCTTACGAGGATTTTGGAGATGTTGTCACTTTCGACACAACATACTTGACCAATAAATACGACATGCCTTTTGCTGTGTTTGTTGGTGTGAACCACCATGGTCAATCGACATTACTTGGATGCGGGTTGGTTTCAAGAGAGGACACTGAATCATTTGTATGGCTATTCAAGTCGTGGCTTCGTTGTATGGTAGGAAAGGCCCCCGTTGGTATTATGACTGACAAATGTAAAGCTATGCAAAATGCCATTGAGTTAGTGTTCCCTACAACACGCCATAGTGCAGTACAATTGAAGCCACGAATAGAGAGATTTGACAAATTGTGCAAGCATTTCTATAATGTTGCTGAAGTGGCTGCAGAGTCTGAAGTTGCAACCAAGGCACTCCATGAAACATTGCATGACTTTGATTCTAATTTGCCCACCATGGATGATACCACTGGAAATGGCAAAGAAAGTTTCAATGAGGACTCAAATCCAAACACCGGTACTAAAATCCGCAGTCCAGTGCATGTCAATCGTAAAGGCCGTCctcaaaaaaataggaaaatatcTATACTTGAAACAGTTTGTAAgaagccaagaaagaaaaccaGGACAAGTGATAATGGAGAGACTGCTACGGAGTGCAATGTTGGAATGATTAGTAGTCAGACGGAAAGCAGTATACGCGTGGAATCATCTATTGAGGTTGTCACTGGCGATAGTTTGATGGATTCAAATACCGTGGGTAGTTTGTATTTGTTAAGGGATAACTTGCTTGTGTATTGGTGTCTTGTTACCTGGTGGGATGCTATTCAGGGACATTATGTGGGGAGGCATGTTTATGTAAATGGGGAGTTGATGAATTATGTTGGTTAA 1524 0.3983 MNSSDKTVNCNSSGHEFIEIDKFQDDGVSWEPATDMCFSSADEVNSFYGEYALRKGFGWKIRTSRKGQDGEICYLILACSKERHIVSNVPCTLKTNPTKGKKCPARMCIKMEKDGLWYVTKFDPSHSHECSPTKARLFKANKEINLHVKRTIQMNDDAGVTINKTFQSLVKDAGGGGHENISFCERDVKNYVNKERRAIGKEDVDNEFHVRNVFWADARSRAAYEDFGDVVTFDTTYLTNKYDMPFAVFVGVNHHGQSTLLGCGLVSREDTESFVWLFKSWLRCMVGKAPVGIMTDKCKAMQNAIELVFPTTRHSAVQLKPRIERFDKLCKHFYNVAEVAAESEVATKALHETLHDFDSNLPTMDDTTGNGKESFNEDSNPNTGTKIRSPVHVNRKGRPQKNRKISILETVCKKPRKKTRTSDNGETATECNVGMISSQTESSIRVESSIEVVTGDSLMDSNTVGSLYLLRDNLLVYWCLVTWWDAIQGHYVGRHVYVNGELMNYVG 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02442 507 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 319 IPR031052 GO:0006355
Tsu04g02442 507 Pfam MULE transposase domain 230 315 IPR018289 -
Tsu04g02442 507 MobiDBLite consensus disorder prediction 360 389 - -
Tsu04g02442 507 Pfam FAR1 DNA-binding domain 46 131 IPR004330 -
Tsu04g02442 507 MobiDBLite consensus disorder prediction 358 400 - -
Tsu04g02442 507 PANTHER OS03G0843700 PROTEIN 9 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02442 Tsu-Chr4 27526877 27531659 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu04g02442 MULE 3.3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02442 - - cam:101513893 471.085