Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02428 ATGAACACATTTTCACATGTACCTCCGGGATTTCGTTTTCATCCAACTGATGAAGAACTAGTTGATTACTATCTCAGGAAGAAGGTATTGTCTAAAAAGATTGATCTAGATGTCATCAAAGATGTTGATCTCTACAAAATTGAACCATGGGATCTTCAAGAATTATGCAAAATAGGAAGTGATGAACAAAATGACTGGTACTTTTTTAGTCATAAGGATAAGAAGTATCCAACAGGAACTCGGACGAATAGAGCAACAAAGGCAGGATTCTGGAAAGCAACTGGAAGAGATAAAGCAATATACTCAAAACAATTCCTAGTTGGAATGAGAAAGACTCTAGTGTTTTATAAAGGACGTGCCCCAAACGGACAAAAATCTGATTGGATCATGCATGAGTATCGCCTAGAAACTAATCAAAATGGAACTTCTCAGGAAGAAGGGTGGGTTGTATGCAGGGTATTCAAGAAAAGAATGACAACAGTACAAAAAATGAGTGAGTATGATCAATCACCATGTAATTGGTATGATGATCAAGTTTCCTTCATGCCTGATCTTGAATCTCCAACTTCAACCAATCCTCACCAAAATTATACTTCATCTTACCACTCCTGCAAATCAGAACTAGAATTAATGCAATACCAACACCATGATCATGCTAATTTTATCCAACTTCCACATCTTGAAAGCTCAAAAATCACTCAATCAATTATCCCTTATAATCATGTTCATGCAAACAATAATATTAATGTACAACAAATGCAATATTTGCATTACCATCAACAAAATCTTCACTCGATATACGGCGGCGGTGGTGGGAGTAGTACTACTACTGGTAATAATGATGAACAAGTTACTGATTGGAGAGTTCTTGATAAATTTGTTGCTTCTCAGCTAAGtaatgaagataataataataataatcaagaAAATGTTTCTAATAAACAAACTAGTTCTTTCTCCAATTCAGAAACTATTCTTCAGGTGGCTGAACAAATTACTCTTCTTGCAAATGGATCAAAAAAGAATGAAGTTTCTGAGGAACATGCTTCAACTTCTACCTCCAGTTGCCACATGGAACTTTGGAAGTGA 1089 0.3499 MNTFSHVPPGFRFHPTDEELVDYYLRKKVLSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTSQEEGWVVCRVFKKRMTTVQKMSEYDQSPCNWYDDQVSFMPDLESPTSTNPHQNYTSSYHSCKSELELMQYQHHDHANFIQLPHLESSKITQSIIPYNHVHANNNINVQQMQYLHYHQQNLHSIYGGGGGSSTTTGNNDEQVTDWRVLDKFVASQLSNEDNNNNNQENVSNKQTSSFSNSETILQVAEQITLLANGSKKNEVSEEHASTSTSSCHMELWK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02428 362 MobiDBLite consensus disorder prediction 348 362 - -
Tsu04g02428 362 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Tsu04g02428 362 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Tsu04g02428 362 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Tsu04g02428 362 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Tsu04g02428 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 327 - -
Tsu04g02428 362 MobiDBLite consensus disorder prediction 339 362 - -
Tsu04g02428 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 327 - -
Tsu04g02428 362 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02428 Tsu-Chr4 27371134 27375123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02428 1 362 NAC Transcription Factor Family AT1G12260 56.319 6.71e-140 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu04g02428 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02428 - - gmx:100797916 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02428 04 27371134 27375123 Tsu04g02428 04 27371134 27375123 ECH
Tsu05g00360 05 2685527 2687380 Tsu04g02428 04 27371134 27375123 PCT