Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02427 ATGTCATCCTCTTCATTATCCACCTTGGACCACCTCCCTTCTTCCGAGCAACTTTGTTATGTCCACTGCAACATTTGTGACACCATCCTtgctgTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACCAATCTTTTACCAGTCAACATGCGTGCATTACTTCTTCCTTCTCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTTcagGAGGAGATGCCAAACCCAGCTCCAAATTTTCTGATGAATCACACAAATCCACCAAATGAGTTCTCTATGCCTCCTAGGGCTGTAGCTGATGAGCTTCCAAGGCCACCAATCATCAACAGACCTCCAGAGAAAAGGCAGAGAGTTCCTTCAGCATACAATCGTTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCTGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATAAAGAAGACAAATGTGTGCCAGCAGGAAGGAGATGATCAGGCTATGTTGAAAGATAATGGAGGGTTTTATGCTTCAGCTAATCTTGGTGTTTCTCCTTACTAA 651 0.4439 MSSSSLSTLDHLPSSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHNLLQEEMPNPAPNFLMNHTNPPNEFSMPPRAVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTIKKTNVCQQEGDDQAMLKDNGGFYASANLGVSPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02427 216 PANTHER PROTEIN YABBY 6-RELATED 1 214 IPR006780 GO:0007275
Tsu04g02427 216 SUPERFAMILY HMG-box 121 170 IPR036910 -
Tsu04g02427 216 Gene3D High mobility group box domain 122 173 IPR036910 -
Tsu04g02427 216 Pfam YABBY protein 14 177 IPR006780 GO:0007275
Tsu04g02427 216 PANTHER PROTEIN YABBY 4 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02427 Tsu-Chr4 27326157 27329419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02427 25 214 C2C2-YABBY Transcription Factor Family AT4G00180 59.906 1.24e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tsu04g02427 YABBY 3.9e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02427 K25796 - gmx:100798441 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02427 04 27326157 27329419 Tsu04g02427 04 27326157 27329419 ECH