Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02422 atgaacaacGTTAgcatcaacaaaaacaacaacacaacTCAAGCTTGTGCTGCATGTAAATACCAACGTAGAAAATGTGCACCTGATTGCATATTAGCACCTTATTTTCCTCATGATCGTCAAAGACAATTTCTTAATGCACACAAATTATTTGGTGTTAGTAACAttaacaaaatcataaaaaatcttGATCCTCATCTTAAAGATCAAGCTATGAGAACAATCATTTATCAATCTGATATGCGAGCCAATGACCCTGTTGGTGGTTGTTACAAATATATTCAAGATCTTCAAGCCCAAATTGAATATTGTAAAACAGAACTTGATCTTGTTCTTCAACAACTCGCAGTTTTTCGAGCACAATCTCatcaacaaccacaacaacaagAAGTCGTTAATTATGGTGATCAAGTTATTATGAATTCAGATTCATTGTTAGGCTTTTATAATCCATTTGGATCTATTGATTCGGCTACCGCACCAGCTCATTATCATTATAATGTTCAACAACAAGCTGTTCCACAATTACAAGAACATGAACAAGAACAATACATTATGATGCATGAAAGTAATAGTAGTAGCAGTAGTATTAATAGTACTACTCCTTTGCAACCACATGTTAATAATTGGGGGGCTATGCAAAGTTCTATTTCTTTATCATCTTTGTCATTGCATGGACAAAGTAGTAATGCTAGTGAGGAGTATGATCATAAGCCAATTCTTGATATACCTTGTGCTGAAAGAAATGAATTAGGGTTCGACTCCGGAGAAATACTGCACCATAGTGATGAAGCAATTTTGTTTAAGATAAATGATAGAGTAATTAAAGGAGAGGGTGACTACATTCAACAAACACAAGTTCAGGCACACGATCATGATCTAAAAGGAGCAGCAACATTATTTACTCTAACAAATTGTAGAGGACATGGCAGAGGTCGCTTGGGCGACACACAATGTCAAGTGTGTTTTAAGTTTGGCCACATAACTTCCATGTGTTATCCTCGTTTCAATCAACAGTTTCGTGCAACTATACCACCTGATTATCAAGGATGTTCACAAGGTTTTTCAGGTTTAACTCCTCAAGGTGGAGCTCCTCACTATGGTCTTACCAATGCTTGGATCTGTCCTCAATTTCCACCTCAATCCACCCTCAATTTAATTCCATCACATTCGCATAAAAGGTTAGGTTGGACATAG 1197 0.3442 MNNVSINKNNNTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNINKIIKNLDPHLKDQAMRTIIYQSDMRANDPVGGCYKYIQDLQAQIEYCKTELDLVLQQLAVFRAQSHQQPQQQEVVNYGDQVIMNSDSLLGFYNPFGSIDSATAPAHYHYNVQQQAVPQLQEHEQEQYIMMHESNSSSSSINSTTPLQPHVNNWGAMQSSISLSSLSLHGQSSNASEEYDHKPILDIPCAERNELGFDSGEILHHSDEAILFKINDRVIKGEGDYIQQTQVQAHDHDLKGAATLFTLTNCRGHGRGRLGDTQCQVCFKFGHITSMCYPRFNQQFRATIPPDYQGCSQGFSGLTPQGGAPHYGLTNAWICPQFPPQSTLNLIPSHSHKRLGWT 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02422 398 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 246 - -
Tsu04g02422 398 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Tsu04g02422 398 Pfam Lateral organ boundaries (LOB) domain 15 110 IPR004883 -
Tsu04g02422 398 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 10 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02422 Tsu-Chr4 27246053 27248378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02422 14 144 AS2 family AT3G13850 67.176 6.20e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g02422 LOB 3.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02422 - - pvu:PHAVU_010G138500g 355.14