Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02418 ATGGATTTGAAGCCTCCTCATGTTTCTCCGATTCTTACTGATCCTGTTCCTTCGAACAAGTCAAGGCTTGGAATCCATTCTAGTTTGTTAGCTTATTCGCAACAAGATTCTCCGTTATCGAATTCAGGGAAGTACACAAAATCAAATTCGAAGAAAAATATGGGAAATCTTGATGATGTTAGGTCTAATGGCTGGTTGGATGCTATGAAAGCATCTTCGCCACCAAGGAAGAAGTCGACACATAAAGGTTCGAGTGCTCAGGTTGCTTCATTTGACTATGACGTTGAAGATTATAATTTATGGATGCTGGGATATCCTTCTGCACTAGACGCTTTCGAGAAAATTGTTGATCGTGCAAAGGATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACTCTTTCACCTATAGTAGAAGATCCTGATTGTGCTTTTATGTCTGAACCTATGCGAACAACGGTGCAAAGTGTGGCGAAGTATTTCCCTACAGCCATCATTAGTGGAAGAAGTCGTGACAAGGTTTTTGATTTAGTTAAACTAACAGAACTCTACTATGCCGGTAGTCATGGGATGGACATTATCGGCCCTGTTAGTGACATTTTGTCCGTAAACCATCCAAATTGTATCAAGTCTACTGACCAACAgGGAAAGGAAATAACTCTCTTTCAACCGGCAAGAGAATTCCTTCCTATGATTGATGAGGTTTTTAAAACCCTCATCGAGATTACTAAAGATATAGAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGTTTCTGTACATTACCGTAATGTAGAAGAGAATAATTGGACAACGATAGGACAACGTGTCCATGATATCATAAAGAATTATCCTCGTTTACGCTCAACTCATGGACGGAAGGTTTTAGAAATCCGTCCTGTAATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTGCTTGAATCTCTAGGGTTGACTAATAGGAATGATGTGCTTCCCATTTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGAGGGAGAGGAATCGAGGTTATGGGATATTGGTTTCATTAGCGAGAAAAGAAAGCAATGCTCTCTACTCTCTCCGAGACCCTAATGAGGTCATgaaatttcttcaactcttgGTGAATTGGAAGAGGGACCAAGAAACAGTGAAGAAATAA 1179 0.3893 MDLKPPHVSPILTDPVPSNKSRLGIHSSLLAYSQQDSPLSNSGKYTKSNSKKNMGNLDDVRSNGWLDAMKASSPPRKKSTHKGSSAQVASFDYDVEDYNLWMLGYPSALDAFEKIVDRAKDKKIAMFLDYDGTLSPIVEDPDCAFMSEPMRTTVQSVAKYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSDILSVNHPNCIKSTDQQGKEITLFQPAREFLPMIDEVFKTLIEITKDIEGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDIIKNYPRLRSTHGRKVLEIRPVIDWNKGKAVEFLLESLGLTNRNDVLPIYIGDDKTDEDAFKVLRERNRGYGILVSLARKESNALYSLRDPNEVMKFLQLLVNWKRDQETVKK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02418 392 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 390 - -
Tsu04g02418 392 CDD HAD_TPP 125 375 - -
Tsu04g02418 392 TIGRFAM T6PP: trehalose-phosphatase 122 381 IPR003337 GO:0003824|GO:0005992
Tsu04g02418 392 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 390 IPR044651 GO:0004805|GO:0005992
Tsu04g02418 392 Gene3D - 225 392 IPR023214 -
Tsu04g02418 392 Gene3D - 124 212 IPR023214 -
Tsu04g02418 392 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 126 345 IPR006379 -
Tsu04g02418 392 SUPERFAMILY HAD-like 125 384 IPR036412 -
Tsu04g02418 392 MobiDBLite consensus disorder prediction 34 57 - -
Tsu04g02418 392 Pfam Trehalose-phosphatase 127 370 IPR003337 GO:0003824|GO:0005992
Tsu04g02418 392 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02418 Tsu-Chr4 27203247 27208784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02418 122 377 Trehalose Biosynthesis Gene Families AT1G23870 22.509 1.21e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02418 K01087 - tcc:18606311 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02418 04 27203247 27208784 Tsu04g02418 04 27203247 27208784 ECH