Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02415 ATGGCTAGTAGATGGATGAAGTCATTACAATGCAAATCAAAAGCATTTGAAGATGTTTATAATCCATATCCCAAAATTCTCATACCCAGTTCCAGTTGTAGAAAAACCGACACAGTCGATGTTCCAAAACCCAAacctaaaaaatcaaaaacatccTTAGAAAATAAACATTctagttcaaaatcaaaatcaaattcagaaTTAGAATTACCCACGAGACGTTCACGAAGcacaaccacaacaacaacagcaacaaccaCTTCATCATCTTCACGTTCGATCACTGAACTACCAGAAGGACACCCATCACGCAACGTGGTGGATATAATTTTCCATACTAGTTGGGGCAATAAGGAATTTCCGGGTCGGGTTGAAATCGTGTTTAAGGTGCAAAACGGAGCACGAACTATGTCAAGGTTTGAAGAGTTTCGTGAGGCGGTGAAATCACGCGCTGCTGATTCTGTTGTTGATTCTGAGGGGAAGAATTGGGAGGAGAATGCGAGGTGTGTGGCTGATGGAAATGAGGTGATGCAGTTTCATTGTTTGGGTTCTGCTGAAGATGGTGGTTCACACGGTGGTTGGTTGTTTCCGGAGCGTAAAGGGTCGGCGATTTGTACGTTTTCCGGGAGCGGCGGTGCGCATGAGTATGGTGGCGGAGGGAAGGGTAAACAGGCAATGTTGGTTTGTCGGGTTGTGGCGGGTCGGGTTTTGAAACAAATTGGGTTTTTGGATTCTTTGTTGGATAAGCGAGTTGGGTTTGACTCAGTGAGTGGGGAAAACGAACGATTTGATCTGATACACGAAGCTCTTGAATCTCTGATGCAAAAGAAATCCACCACCGAGTCTTTCCATGGTGTGTTGAACTCCGGCAAACAATCATTTCAGgctgaacaatttttttattatcacaATACACCGGATGCGGATCGATTGGTGATTTCATCGGTGCATTTGGATCATGATGTGGTACCATGGTTCCAAATGATTCAACGATCTCATCCTTTCCGATCATGGCAAGAATTCACGCGTGCGTTGGAAATGGATTTTGGTCCATCCGCTTACGATTGTCCTCGTGCTGCATTGTTTAAGTTGAATCAGAGTAGCTCTGTTGCTGAATATTACACATAG 1128 0.4078 MASRWMKSLQCKSKAFEDVYNPYPKILIPSSSCRKTDTVDVPKPKPKKSKTSLENKHSSSKSKSNSELELPTRRSRSTTTTTTATTTSSSSRSITELPEGHPSRNVVDIIFHTSWGNKEFPGRVEIVFKVQNGARTMSRFEEFREAVKSRAADSVVDSEGKNWEENARCVADGNEVMQFHCLGSAEDGGSHGGWLFPERKGSAICTFSGSGGAHEYGGGGKGKQAMLVCRVVAGRVLKQIGFLDSLLDKRVGFDSVSGENERFDLIHEALESLMQKKSTTESFHGVLNSGKQSFQAEQFFYYHNTPDADRLVISSVHLDHDVVPWFQMIQRSHPFRSWQEFTRALEMDFGPSAYDCPRAALFKLNQSSSVAEYYT 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02415 375 PANTHER POLY(ADP-RIBOSE) POLYMERASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 2 262 - -
Tsu04g02415 375 MobiDBLite consensus disorder prediction 38 70 - -
Tsu04g02415 375 Gene3D - 92 267 - -
Tsu04g02415 375 MobiDBLite consensus disorder prediction 24 100 - -
Tsu04g02415 375 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 262 - -
Tsu04g02415 375 Pfam Retrotransposon gag protein 315 375 IPR005162 -
Tsu04g02415 375 SUPERFAMILY ADP-ribosylation 94 241 - -
Tsu04g02415 375 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02415 Tsu-Chr4 27118416 27124216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02415 93 236 C2H2 Transcription Factor Family AT2G29660 36.471 5.07e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02415 - - cam:101501278 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02415 04 27118416 27124216 Tsu04g02415 04 27118416 27124216 ECH