Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02371 ATGGAAAGACACAAATGCAAGCTATGTTCAAGAACATTTGGTAACGGAAGAGCACTTGGTGGTCACATGAAAGCTCATCTTGCTACAATTAAGTCTCAAAAACAACAGTTTACTCAATTTGcttctttttcatcttcatcatcagaaTCAGAATCGGAACacgaagaagaaaaaactctgattaattatgttttgagagAGAATCCAAAGAAAAGTCTGAAAATTGCAGATCCTGAATTTTCTTTCATACCTGATCAGACTGAGTCTGTTATTGTTCAAGATAGAGAAAGTGAGACTGAGTCAAAAAACAACCCGACTCGTCAACAACGATCCAAACGGAACAGAAACCAGAACAACAACAATAGCAAGAATTTTCCAGAAAGGAAAAAATCAAAGTCAAGTTTTATGATGTTAACAACACCATCAACATTCAATGATCAAGAACCTGTTAGTTCAGTTTCTGATACTTCTCCTGAAGAAGATGTTGCTATGTGTCTGATGATGCTTTCAAGAGACAAATGGAGTAGGGAGATGAACATTAACAATGTGGTCGAAGAAGAGGGATCAGTGGAAAAAACATCCAAGTTGTTGAAACGAGTTCGTGGGAAGCATTTATGTGAAAATTGTCGAAAATCATTTCGATCTTCTAGAGCATTGGGAAGTCATCGAAGTGTTTGTTGTCGCGATGAAGCGAAGAATGGTAATAATGATGATAAGATTTTTGAATGTCCATTTTGTTTTAAGGTTTTTGGTTCTGGTCAAGCACTTGGTGGTCACAAGAGATCTCATCTCATGATCCCTTCTTCATCGACTTCCACCGCTAATGCTAATGCTAATGCTAATGCTAATGCCGATGCTAATGCTAATGCTAATGTTAACGTTGATGTTAATGTTGATGCTTCTGttagattcaaagagagtttcATAGATCTCAATTTGCCAGCACcacttgaagaagaagaagatgatctTAGTGTTGTTTCTGAAGCCTAA 993 0.3353 MERHKCKLCSRTFGNGRALGGHMKAHLATIKSQKQQFTQFASFSSSSSESESEHEEEKTLINYVLRENPKKSLKIADPEFSFIPDQTESVIVQDRESETESKNNPTRQQRSKRNRNQNNNNSKNFPERKKSKSSFMMLTTPSTFNDQEPVSSVSDTSPEEDVAMCLMMLSRDKWSREMNINNVVEEEGSVEKTSKLLKRVRGKHLCENCRKSFRSSRALGSHRSVCCRDEAKNGNNDDKIFECPFCFKVFGSGQALGGHKRSHLMIPSSSTSTANANANANANADANANANVNVDVNVDASVRFKESFIDLNLPAPLEEEEDDLSVVSEA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02371 330 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 330 - -
Tsu04g02371 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 263 IPR013087 -
Tsu04g02371 330 SUPERFAMILY beta-beta-alpha zinc fingers 204 263 IPR036236 -
Tsu04g02371 330 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Tsu04g02371 330 MobiDBLite consensus disorder prediction 91 107 - -
Tsu04g02371 330 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 330 IPR044303 GO:0006355
Tsu04g02371 330 MobiDBLite consensus disorder prediction 86 134 - -
Tsu04g02371 330 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Tsu04g02371 330 Pfam C2H2-type zinc finger 241 263 - -
Tsu04g02371 330 Pfam C2H2-type zinc finger 204 223 - -
Tsu04g02371 330 Pfam C2H2-type zinc finger 3 28 - -
Tsu04g02371 330 SMART c2h2final6 204 224 IPR013087 -
Tsu04g02371 330 SMART c2h2final6 241 263 IPR013087 -
Tsu04g02371 330 SMART c2h2final6 4 26 IPR013087 -
Tsu04g02371 330 MobiDBLite consensus disorder prediction 110 124 - -
Tsu04g02371 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Tsu04g02371 330 Gene3D Classic Zinc Finger 172 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02371 Tsu-Chr4 26547187 26548395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02371 1 327 C2H2 Transcription Factor Family AT3G60580 35.817 3.32e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g02371 zf-C2H2_6 1.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02371 - - vun:114173003 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00389 05 2917131 2917829 Tsu04g02371 04 26547187 26548395 PCT