Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02359 ATGGCACCAAGAAAAGATGTAAAAACTAAGAAAATAATGAATAGAGGTGCATGGACCACAGAAGAAGATCAAAAGCTAGCACAATGTATTCAAACTCACGGTGCTAAGAAGTGGAAAACTGTTTCAATCAAATCAGGTTTGAATAGGTGTGGAAAGAGTTGCAGGCTAAGATGGTTGAATTATCTTAGACCCAATATCAAGAGAGGAAACATATCTGATGAAGAAGAGGATTTAATTCTTAGACTTCACAAACTTCTTGGAAACAGGTGGTCTTTGATAGCCGGGAGGCTTCCGGGACGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGTTAATCAAATAGAAGAAAAACCAGAAACATCCACTACACAAGAAACTTTAGCTCAGGACAATGTTATTGGGGATAGTTCTATGTTAGAGAATAAAGATTCAGTTAATGGAAGTATTGATTCAGATGTTATCTTTGATGTGAATGAATTCTTAGACTTTTCTACTGAAGAATCATATGGGTTTGATTGGGTGAATAAattcttggagttagatcagATTCAGTTTATTGAGAACACAGAAAGATCTGAGTGA 600 0.34 MAPRKDVKTKKIMNRGAWTTEEDQKLAQCIQTHGAKKWKTVSIKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQIEEKPETSTTQETLAQDNVIGDSSMLENKDSVNGSIDSDVIFDVNEFLDFSTEESYGFDWVNKFLELDQIQFIENTERSE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02359 199 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 8 192 - -
Tsu04g02359 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Tsu04g02359 199 Gene3D - 71 138 - -
Tsu04g02359 199 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tsu04g02359 199 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tsu04g02359 199 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Tsu04g02359 199 SMART sant 67 115 IPR001005 -
Tsu04g02359 199 SMART sant 14 64 IPR001005 -
Tsu04g02359 199 CDD SANT 72 113 IPR001005 -
Tsu04g02359 199 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Tsu04g02359 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 192 - -
Tsu04g02359 199 Gene3D - 15 67 - -
Tsu04g02359 199 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu04g02359 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu04g02359 199 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02359 Tsu-Chr4 26432937 26433979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02359 9 183 MYB Transcription Factor Family AT3G13540 48.663 1.53e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g02359 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02359 K09422 - gmx:100799575 295.819