Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02356 ATGGAAAGGGAAGACTCTTTCCAAACTCATGAACTTTGTCTTCAACCAACCACTTCCTTATCTTCATCCATTATTGTCTCAACCTCTAATTCCTcttctgaagaagaagaagaagctactaacattaaaagcaaaaaattaagCAATAATAGtagcaaaaaagaaaagaaaaagaagaaagtggcAATGGTGAATAGAGTGATTCATAAAAATGATGATATGAAGCATCCAACATATAGAGGAGTAAGAATGCGTCAATGGGGCAAATGGGTATCAGAAATTAGAGAGCcaagaaaaaaatcaagaatttgGCTTGGAACTTTTCCAACTCCTGATATGGCGGCTCGAGCTCATGATGTCGCGGCTCTCACTATCAAAGGCTCTTCGGCTTACCTCAACTTTCCTGAATTAGCTACGGTGTTGCCACGGCCAGCTAGTGCCTCTCCTAAGGATATTCAAGTCGCGGCCGCCAAAGCAGCCGCTACTATTTATAATCATCCAACCAATCAAATTGAATTGGAAGTTGAAGCCGAGCCGAGCCAAGTTGTTTCTTCTTCATCACCTTCTTCGGGTCATAGTGAAGGGTCATCGTCAAATGGTGAGGATGACATGTTTTTGAACCTTCCCGATCTCACACTCGATTTAAGTCGTAATAGTGATGGTGAGTTTTATTACTCCTCGTCAGCTTGGCTAGTAACGGGAGCTCAATATATAGACTCGGGCTTTCGGCTTGAAGACCCTTTTCTATGGGACTATCAAGTAACCTAA 768 0.3763 MEREDSFQTHELCLQPTTSLSSSIIVSTSNSSSEEEEEATNIKSKKLSNNSSKKEKKKKKVAMVNRVIHKNDDMKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELATVLPRPASASPKDIQVAAAKAAATIYNHPTNQIELEVEAEPSQVVSSSSPSSGHSEGSSSNGEDDMFLNLPDLTLDLSRNSDGEFYYSSSAWLVTGAQYIDSGFRLEDPFLWDYQVT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02356 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 26 239 - -
Tsu04g02356 255 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Tsu04g02356 255 MobiDBLite consensus disorder prediction 178 203 - -
Tsu04g02356 255 Gene3D AP2/ERF domain 78 136 IPR036955 GO:0003700|GO:0006355
Tsu04g02356 255 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Tsu04g02356 255 MobiDBLite consensus disorder prediction 20 61 - -
Tsu04g02356 255 MobiDBLite consensus disorder prediction 20 35 - -
Tsu04g02356 255 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Tsu04g02356 255 MobiDBLite consensus disorder prediction 179 203 - -
Tsu04g02356 255 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Tsu04g02356 255 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Tsu04g02356 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 239 - -
Tsu04g02356 255 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Tsu04g02356 255 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02356 Tsu-Chr4 26386806 26387702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02356 71 249 AP2-EREBP Transcription Factor Family AT2G44940 50.000 4.35e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g02356 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02356 - - mtr:MTR_4g100650 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00405 05 3034094 3034693 Tsu04g02356 04 26386806 26387702 PCT