Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02354 ATGACGCGGCGTTGTTCCCATTGCAGTCACAATGGGCACAACTCAAGAACATGTCCAAACCGTGGTGTTAAGCTATTCGGAGTTCGATTAACCGATGGGATCCGGAAAAGTGCTAGTATGGGTAATCTTAGTCATTATACTGGTTCCGGGTCTGGATCCCTTCATACCGGGTTAAACAACCCGGGTTCTCCCGGTGAAACACCTGATCATGCTGCTGTTGCTGATGGTTATGCTTCTGAGGATTTTGTTCCCGGTTCTTCTTCTGCTTCCCGTGAAAGAAAAAAgggTACTCCATGGACCGAAGAGGAGCATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGCAAAGGTGACTGGCGTGGAATTGCTAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGAAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGATGCACCTGATGCTTCAATGGTACCGCAAGACTTCATGTCAGCTAATCCGCCACAGACTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCCCCGCTCGATGAAGAATGTGAATCAATGGATTCCACAAACTCAAACGACGGAGAGTCTGCCTCTGCCCCTGCCCCTGCCCCATTAATGCCCGATAGCAACGCACAAGCGTCGTCTTACCCGCTAGTATATCCGGCATATTATTCTCCATTCTTCCCATTTCCTCTTCCCTATTGGTCTGGATACAGTCCGGAGCCAGCTCCTAAGAAGGAAACACACGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCGATCAATGTCGATGAACTTGTTGGCATGTCAAAACTGAGTTTAGGAGAGACTATTGGAGATGCCGGTCCCTCGACTTTGTCTCGTAAACTACTCGAAGAAGGACCTTCTAGACAGTCGGCATTTCATACAACTCCAGCTTGTGGGACCGTTCTGTGA 999 0.4785 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGIRKSASMGNLSHYTGSGSGSLHTGLNNPGSPGETPDHAAVADGYASEDFVPGSSSASRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAPDASMVPQDFMSANPPQTETEGNNPLPAPPPLDEECESMDSTNSNDGESASAPAPAPLMPDSNAQASSYPLVYPAYYSPFFPFPLPYWSGYSPEPAPKKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDAGPSTLSRKLLEEGPSRQSAFHTTPACGTVL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02354 332 SUPERFAMILY Homeodomain-like 93 148 IPR009057 -
Tsu04g02354 332 MobiDBLite consensus disorder prediction 170 227 - -
Tsu04g02354 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 146 IPR006447 GO:0003677
Tsu04g02354 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Tsu04g02354 332 MobiDBLite consensus disorder prediction 39 63 - -
Tsu04g02354 332 PANTHER BNAC01G21010D PROTEIN 1 330 - -
Tsu04g02354 332 MobiDBLite consensus disorder prediction 39 100 - -
Tsu04g02354 332 CDD SANT 98 143 IPR001005 -
Tsu04g02354 332 ProSiteProfiles SANT domain profile. 94 147 IPR017884 -
Tsu04g02354 332 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g02354 332 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Tsu04g02354 332 SMART sant 95 145 IPR001005 -
Tsu04g02354 332 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Tsu04g02354 332 Gene3D - 97 149 - -
Tsu04g02354 332 PANTHER TRANSCRIPTION FACTOR KUA1 1 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02354 Tsu-Chr4 26360227 26363913 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu04g02354 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02354 - - cam:101491712 579.711