Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02347 ATGATGATGGTTGAAAAAGAAGACTTGGGTTTAAGTCTAAGCTTGAACTTTTTTCAAAATACCCCAAACCAACCTCAACCTCTCAATCTCACATCCTCTTCTCCTTCTCAATCTTATTTCCATCCTAAAAAATTCTCTATTCAAGAAACTATCACTTCCCAAGATCGAAACTCGAAGCTTGGAATTGATGTGAATCGATTACCATGTACCGTTGTTGAatgcgaagaagaagaagctggGGTTTCATCTCCGAACAGTACAGTTTCGAGTGTAAGTGGAAAACGAAGCTCGAGAGAATTAGATAATGACGTGGACAATAGAGGGAATATCAGTGATGAAGAAGACGCTGAAACCGCTAGGAAAAAACTCAGACTCTCTAAAGACCAATCACTTATTCTAGAAGAAACATTCAAAGAACACAATACCCTTAATCCCaaaCAAAAATTGGCACTTGCAAAACAACTTGGCCTTCGTCCAAGACAAGTTGAAGTCTGGTTCCAAAACAGAAGAGCCAgGACAAAGCTAAAGCAAACGGAGGTTGATTGTGAGGTGTTGAAAAGGTGTTGTGAAAATCTAACGGATGAAAATAGGAGACTACAGAAGGAAGTTCAAGAATTAAGAGCACTGAAACTTTCCCCTCAATTTTACATGCAAATGACACCACCAACTACTCTTACTATGTGCCCATCTTGTGAACGTGTGGCTGTTCCATCTTCCGGTGTTGATGCATCCAACCGTCACATTTCTATGGCCCAGGCCCATCCTCGGGCTTTACCCATAGGCCCATGGGCTTCTGTAGCTCCCATCACGCATAGGATGTTTGATGTTTTCCGTCAATGA 840 0.4024 MMMVEKEDLGLSLSLNFFQNTPNQPQPLNLTSSSPSQSYFHPKKFSIQETITSQDRNSKLGIDVNRLPCTVVECEEEEAGVSSPNSTVSSVSGKRSSRELDNDVDNRGNISDEEDAETARKKLRLSKDQSLILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSGVDASNRHISMAQAHPRALPIGPWASVAPITHRMFDVFRQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02347 279 Pfam HD-ZIP protein N terminus 3 99 IPR006712 GO:0005634
Tsu04g02347 279 SMART halz 176 219 IPR003106 GO:0006355|GO:0043565
Tsu04g02347 279 Pfam Homeodomain 120 174 IPR001356 GO:0003677
Tsu04g02347 279 ProSitePatterns 'Homeobox' domain signature. 151 174 IPR017970 GO:0000981|GO:0006355
Tsu04g02347 279 MobiDBLite consensus disorder prediction 96 117 - -
Tsu04g02347 279 Pfam Homeobox associated leucine zipper 176 210 IPR003106 GO:0006355|GO:0043565
Tsu04g02347 279 Gene3D - 124 174 - -
Tsu04g02347 279 PRINTS Lambda-repressor HTH signature 147 156 IPR000047 GO:0003677
Tsu04g02347 279 PRINTS Lambda-repressor HTH signature 156 172 IPR000047 GO:0003677
Tsu04g02347 279 Coils Coil 175 212 - -
Tsu04g02347 279 MobiDBLite consensus disorder prediction 80 95 - -
Tsu04g02347 279 SUPERFAMILY Homeodomain-like 112 177 IPR009057 -
Tsu04g02347 279 CDD homeodomain 120 177 IPR001356 GO:0003677
Tsu04g02347 279 PANTHER - 5 271 - -
Tsu04g02347 279 MobiDBLite consensus disorder prediction 75 117 - -
Tsu04g02347 279 ProSiteProfiles 'Homeobox' domain profile. 116 176 IPR001356 GO:0003677
Tsu04g02347 279 SMART HOX_1 118 180 IPR001356 GO:0003677
Tsu04g02347 279 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02347 Tsu-Chr4 26289234 26291291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02347 2 278 Homeobox Transcription Factor Family AT4G16780 60.764 1.35e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu04g02347 HD-ZIP_N 7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02347 K09338 - gmx:100813367 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00408 05 3088143 3090060 Tsu04g02347 04 26289234 26291291 PCT