Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02342 ATGGCTAATTACGATGAAGTTTCAGCTcttaaaagaatcaaattacatctTCTAGGTGAATTTTCTCCTCTTCCATCTCCTATTTCACAACCTTGCTTtgactttgattttgatattgattttgattttcaatttcaaactaaCCCAACCACTTCTCAATCCGAATCCAACAATTCTTCAACCGATCTCTTCCAATTTGATTACAAACCTCAACCAATTGAACCTCAGAGCCCCAAATTCATAACATCTCATCCTCAACAAACCGTAGAGAAGAAGAAACCCAGATTGAGTCGTAAACCTTCGCTGGAAATCGCTCTCCCCAATAAAACAACCGAATGGATCCAATTCGGAAACCCGGATCCGAAACAAGAAGTGGTTGTACAGAAACCGGAAGCTGATGATAAACAGCACTACAGAGGAGTTAGAAGAAGACCATGGGGAAAGTTCGCCGCTGAGATCCGTGACCCGAACAAACGCGGGTCTAGGGTTTGGCTTGGAACGTTCGAAACGGCGATTGAAGCTGCTAAAGCCTATGATAGTGCTGCTTTTAGGATGCGCGGATCTAAAGCGATTCTCAATTTCCCACTTGAAGTCAACGAGGCTGTAACGGCGGCGGCGGTGACTTCCGGCGACGGTGACAGAAAACGTTGCCGTGAAGAGGAAGAGATAGTAGAAGCGAAACCGGTGGTGAAAAAGGAGAAAATAACGGAGTTTGATGTGAACTGTTTTAAAGAGATGCCGTTAACGCCGTCAGCTTTGACTGGGTTTTGGGACTGTGATGTTAAGGGGATGTTTAACTTTCCACCGTTGTCGCCGTTATCTTCCTTTTGCTTGTCACCTCTAATCCTTGTTTGa 855 0.4234 MANYDEVSALKRIKLHLLGEFSPLPSPISQPCFDFDFDIDFDFQFQTNPTTSQSESNNSSTDLFQFDYKPQPIEPQSPKFITSHPQQTVEKKKPRLSRKPSLEIALPNKTTEWIQFGNPDPKQEVVVQKPEADDKQHYRGVRRRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDSAAFRMRGSKAILNFPLEVNEAVTAAAVTSGDGDRKRCREEEEIVEAKPVVKKEKITEFDVNCFKEMPLTPSALTGFWDCDVKGMFNFPPLSPLSSFCLSPLILV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02342 284 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 271 - -
Tsu04g02342 284 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 271 - -
Tsu04g02342 284 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Tsu04g02342 284 PRINTS Ethylene responsive element binding protein signature 177 197 IPR001471 GO:0003700|GO:0006355
Tsu04g02342 284 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Tsu04g02342 284 MobiDBLite consensus disorder prediction 77 98 - -
Tsu04g02342 284 Pfam AP2 domain 137 187 IPR001471 GO:0003700|GO:0006355
Tsu04g02342 284 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Tsu04g02342 284 SUPERFAMILY DNA-binding domain 137 197 IPR016177 GO:0003677
Tsu04g02342 284 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Tsu04g02342 284 Gene3D AP2/ERF domain 136 197 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02342 Tsu-Chr4 26226348 26231914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02342 1 284 AP2-EREBP Transcription Factor Family AT5G47230 42.331 1.11e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g02342 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02342 K09286 - gmx:100816039 305.834