Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02341 ATGGCTAATTACGATGAAGTTTCAGCTCTTAAACGCATCAAATTACATCTTCTAGGTGAATTTTCTCCTCTTCCATCTCCAATTTCACAACCTtcctttaattttgattttgattataactttcaatttcaaactgaACAAATTCAATCTCAATCGGAATCGAAATCGGAATCAAACTCCTCTGATTCCGATTCTTCGACTTCTTTGGATCATTATTTAACTGATCTCCTTCAACCAGATACACAAATTCCTTTTGAATTTGATTCAAAACCTCAATTAATTGAAACCGAGAGTCCAAAAGTTCTAATTTCTCATCCTGTTAATAATTCTCAACGAACCGTAGAGAAAAAGCCTCAACTGAATAGAAAACCGTCGCTAAAAGTTGATCTACCAAAGAAAACAACTGAATGGATCCAATTCGGGAAACCCGAACCGAAACCGGAGATGGTTGTACAGAAACCGGAAGCTGCTGAGAAACAGCACTACAGAGGAGTTAGACAAAGACCGTGGGGAAAATTCGCTGCCGAAATCCGTGACCCGAACAAACGCGGGTCAAGGGTTTGGCTTGGAACGTTTGAAACGGCTATTGAAGCTGCTAAAGCTTATGATCGTGCTGCTTTTAAGCTGCGTGGATCTAAAGCGATTCTCAATTTTCCTCTTGAAGTCAACGCGGCGGTGATTGCGGCGGCGGAGGCTTCCGGCGACAAAAAACGGTGCCGTGAAGAGGAAGAGATAGTAGAAGTGAAACCGAtggtgaaaaaagaaaaagtaacgGAATTTGATGTGAACTATCTTAAAGATATGCCGTTAACGCCGTCAGCTTTCACTGGGTTTTGGGATAGTGATGTTAAGGGGTTCAACGTTCCACCGTTATCGCCGTTATCTTCGTTTTGTTTGTCACCTCTTGTGGCTGTGTGA 918 0.3976 MANYDEVSALKRIKLHLLGEFSPLPSPISQPSFNFDFDYNFQFQTEQIQSQSESKSESNSSDSDSSTSLDHYLTDLLQPDTQIPFEFDSKPQLIETESPKVLISHPVNNSQRTVEKKPQLNRKPSLKVDLPKKTTEWIQFGKPEPKPEMVVQKPEAAEKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFKLRGSKAILNFPLEVNAAVIAAAEASGDKKRCREEEEIVEVKPMVKKEKVTEFDVNYLKDMPLTPSAFTGFWDSDVKGFNVPPLSPLSSFCLSPLVAV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02341 305 CDD AP2 160 219 IPR001471 GO:0003700|GO:0006355
Tsu04g02341 305 Pfam AP2 domain 161 211 IPR001471 GO:0003700|GO:0006355
Tsu04g02341 305 ProSiteProfiles AP2/ERF domain profile. 161 219 IPR001471 GO:0003700|GO:0006355
Tsu04g02341 305 SUPERFAMILY DNA-binding domain 161 221 IPR016177 GO:0003677
Tsu04g02341 305 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700|GO:0006355
Tsu04g02341 305 PRINTS Ethylene responsive element binding protein signature 201 221 IPR001471 GO:0003700|GO:0006355
Tsu04g02341 305 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 293 - -
Tsu04g02341 305 MobiDBLite consensus disorder prediction 46 69 - -
Tsu04g02341 305 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 293 - -
Tsu04g02341 305 Gene3D AP2/ERF domain 160 222 IPR036955 GO:0003700|GO:0006355
Tsu04g02341 305 SMART rav1_2 161 225 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02341 Tsu-Chr4 26212162 26213536 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02341 1 295 AP2-EREBP Transcription Factor Family AT5G47230 47.368 4.93e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g02341 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02341 K09286 - gmx:100800453 296.975