Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02339 ATGTACGGAAACAATAATTTTGATTCCGATTTTGCCCTTTTAGACTCTATTCGCCGCCATTTGTTGGGTGAATCAGAAACAATTTTCGGAGCTCCAATAACTTCTTCGGGTAATAATACTCGGGTTTTCTCTCGGAGCTCCAGTTTCAGTAGTTTATATCCATGTTTGAGTGATAATTGGGGTGAATTGCCTCTCAAGGAAGATGATTCAGAAGATATGGTACTTTATGGCGTTCTCCGTGATGCCGTAAATGTTGGGTGGGTTCCTTCTCTTGAAGTCGGGTCACCCGAAAGTATCTCATCGGGTTTTCCGTTAGAATTAACGGTTAAACCGGAACCGGATGTTATTATGCCGGTCGAAATTATTCCCAAGGTGGAGTCTACGGCGGAGCAAGTGGTTCCTGAAGTTCTAAAAGCTGCTCCGGTGAAAGGAAAACACTACCGCGGCGTTAGACAACGACCGTGGGGAAAATTTGCGGCGGAGATTCGTGACCCAGCGAAAAACGGAGCTAGAGTTTGGCTCGGAACATTTGAAACCGCTGAAGATGCAGCTTTGGCTTATGATAGAGCTGCTTATAGGATGAGAGGTTCAAGAGCTTTGTTGAATTTTCCACTTCGGGTTAACTCCGGTGAACCCGACCCGGTTAGAATTACTTCAAAAAGAGGTTCGCCGGAACgttcttcttcatcttcgtCATCGGAAAGTAATTCTCCGGCGAAGAGGAAAAAAGTAATGACAAGTCAGAGTGGATTAAAAACAGGACAAGTGGGAAATCAAGTGGAACAACAATGTACACGTGGAGGACAGTTATTGGtttcttaa 822 0.4355 MYGNNNFDSDFALLDSIRRHLLGESETIFGAPITSSGNNTRVFSRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEVGSPESISSGFPLELTVKPEPDVIMPVEIIPKVESTAEQVVPEVLKAAPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRITSKRGSPERSSSSSSSESNSPAKRKKVMTSQSGLKTGQVGNQVEQQCTRGGQLLVS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02339 273 SUPERFAMILY DNA-binding domain 146 206 IPR016177 GO:0003677
Tsu04g02339 273 Pfam AP2 domain 146 196 IPR001471 GO:0003700|GO:0006355
Tsu04g02339 273 PANTHER DNA-BINDING DOMAIN 32 248 IPR044808 GO:0003700|GO:0009873
Tsu04g02339 273 MobiDBLite consensus disorder prediction 210 273 - -
Tsu04g02339 273 Gene3D AP2/ERF domain 145 207 IPR036955 GO:0003700|GO:0006355
Tsu04g02339 273 CDD AP2 145 204 IPR001471 GO:0003700|GO:0006355
Tsu04g02339 273 ProSiteProfiles AP2/ERF domain profile. 146 204 IPR001471 GO:0003700|GO:0006355
Tsu04g02339 273 SMART rav1_2 146 210 IPR001471 GO:0003700|GO:0006355
Tsu04g02339 273 PRINTS Ethylene responsive element binding protein signature 170 186 IPR001471 GO:0003700|GO:0006355
Tsu04g02339 273 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Tsu04g02339 273 MobiDBLite consensus disorder prediction 221 273 - -
Tsu04g02339 273 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 32 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02339 Tsu-Chr4 26158858 26160414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02339 9 272 AP2-EREBP Transcription Factor Family AT4G17500 56.410 5.35e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g02339 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02339 K09286 - gmx:100803653 327.791