Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02320 ATGGGGAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAATTTTGTGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGAACCTGTTGATTATAACGATCAAAGAGTTTCCAGACTAAAGATTGTATCACTAAATAAGAACAAAGAAGTGAAATTGGTCAAACGAAAGAAGAACCGTGATAATGATTATGCTGCATCTGGAGAGTTCACCCCTGAATATAATCAAGGATTCCAAAAGGCTGTGGATGAGGATACGAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGTGTTCAATTTTGTGGCACCGATGCTAGTGATTTGACAGGTCCTTCGCAGTCGGTGGTATGGGATACTGCGGTGCCTTCGAAGAAGAGAACATGTGCAGGTCGTCTGAAGCATTCTTCTGTTGAGAAGCTCACAAAAGACTTGTGTACTATTCTTCATGAACAACAACAGTCTTGTTTTTCTGCTTCTTCTGAAGAGGAACTTCTTTTTGAAAGTGAAACGCCAATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGTTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCATGCtatggttcgattcccatgctTAGTGATTACACTGCCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAATTCCGCTGGCCAAAGAATGCAACAGGAGCAACTTGAGAGggagAAGTCTCAGcttgaaaaaatagaagttcTTGGAAATCATGATTCACCACTGTGTATAATAGATTTAAATGATGTGGTCAACTATGAGGAGTTTTCAAGAAACTTGACAAATGAAGAGCAGCAGCAATTACTGAAATATCTCCCTGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGATTTAACCTATTTTCAGAAACTTCTCGGGGAAGGCGTCCTTGATATCTCTTTGTTGGGGGCAAACCCTGAAGACTGCAAGACGTTGAAAAGGCTTGCATTGTCTAATCCGTCAAAGTCAAAATGGGTAAAACACTATAATTTTCTAAAGAAAGGTGGCATCAAAGCTGAAAAATGTGATGATTTGGAATCTCCTGCTGTAGCGTCAAGTAATGTTGTTGTGAATGTGAAGAGATTGCGTgtcaaccaaaatcaaaattttccagAATTGAAGACAACAATGAAGAGTCCCAAAAGGGTGATCGTAAAAGCTGGCTATGGCAGCAAAGAAGTTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATATCCTCATAATGGTGGCTTGCACATGATGGATTCTTCAAACTTTTTTGACGAGAGTTCTGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTCCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGCAGCACCAGTAGTAGCTCGGTATATTCTCATGTTACTCGTCCTTGA 1632 0.3983 MGKQGPCYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTEPVDYNDQRVSRLKIVSLNKNKEVKLVKRKKNRDNDYAASGEFTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFCGTDASDLTGPSQSVVWDTAVPSKKRTCAGRLKHSSVEKLTKDLCTILHEQQQSCFSASSEEELLFESETPMVSVEIGHGSMLIRHPSSIVRDEESEASSLSVDNKQCLMNEAYSCYGSIPMLSDYTAMNFSSQGVAKVRNSAGQRMQQEQLEREKSQLEKIEVLGNHDSPLCIIDLNDVVNYEEFSRNLTNEEQQQLLKYLPVVDTAKLPDSLKIMFDSFQFKEDLTYFQKLLGEGVLDISLLGANPEDCKTLKRLALSNPSKSKWVKHYNFLKKGGIKAEKCDDLESPAVASSNVVVNVKRLRVNQNQNFPELKTTMKSPKRVIVKAGYGSKEVVDGSSISPKSLFAYPHNGGLHMMDSSNFFDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSTSSSSVYSHVTRP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02320 543 Pfam Asx homology domain 286 370 IPR028020 -
Tsu04g02320 543 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Tsu04g02320 543 Coils Coil 275 295 - -
Tsu04g02320 543 Gene3D - 287 390 IPR038108 -
Tsu04g02320 543 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 407 IPR044867 -
Tsu04g02320 543 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Tsu04g02320 543 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Tsu04g02320 543 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Tsu04g02320 543 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Tsu04g02320 543 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Tsu04g02320 543 PANTHER OSJNBB0038F03.10 PROTEIN 1 543 IPR044589 -
Tsu04g02320 543 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 543 - -
Tsu04g02320 543 Gene3D - 3 88 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02320 Tsu-Chr4 25893640 25899515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02320 1 519 C2C2-Gata Transcription Factor Family AT4G17570 51.970 2.69e-151 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu04g02320 ASXH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02320 - - gmx:100799745 753.051