Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02318 ATGGAAATCACTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATATTGCTCTTACCTTACCTATGTAACTCACAAGACTCTTTTACTGACTCCAGAGCAACATATTATGGTAGTCCTGATTGCTATGGGACTCCAAggGGAGCTTGTGGTTTTGGATACTATggaaaaatagtaaatgaagGCAGTGTTGCAGCTGTGTCTGCAAAGCTGTGGAAGAATGGAGAAGGCTGTGGTGCATGCTATCAAgtgAGGTGCAAAGTACCACAATTATGTGATTACAATGGAGCAAATGTTGTTGTAACTGACTATGGTGAGGGAGATCGAACTGATTTCATAATGAGTCCACGCGCCTTCTCAAAATTAGGACGCAACTTAGTTGCATCTGAAAAGCTGAAGAAATATGGAACATTGGATGTTGAATACAAAAGGGTTCCTTGTACATATAAAGGCAACAATATAGTATACCAGATCaatgaaaatagtaataatcCTGGTTACTTTGCTATCAATATTCTTTATGTTGGAGGAACATATGATGTCACTGCTGTTGAAATTTGGCAGAGGGAACAACATCAATGGGTGGCCATGCGTAGGTCTTATGGGGCAGTATTTGATTTTGCTAACCCACCAGAAGGTGAAATCAAATTGAGGTTCCAAGTGAGTAGCAATGTTGAAGGCCATTATGTGGTGTCAAGGTTCCCAATTCCTGCTGCATGGAAAGCTGGTGCTACTTATTCCACTAATATTCTGCCTTATTAA 759 0.386 MEITFKHQLGLVCVILLLPYLCNSQDSFTDSRATYYGSPDCYGTPRGACGFGYYGKIVNEGSVAAVSAKLWKNGEGCGACYQVRCKVPQLCDYNGANVVVTDYGEGDRTDFIMSPRAFSKLGRNLVASEKLKKYGTLDVEYKRVPCTYKGNNIVYQINENSNNPGYFAINILYVGGTYDVTAVEIWQREQHQWVAMRRSYGAVFDFANPPEGEIKLRFQVSSNVEGHYVVSRFPIPAAWKAGATYSTNILPY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02318 252 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Tsu04g02318 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Tsu04g02318 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Tsu04g02318 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tsu04g02318 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tsu04g02318 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Tsu04g02318 252 SUPERFAMILY Barwin-like endoglucanases 13 151 IPR036908 -
Tsu04g02318 252 Gene3D - 147 248 IPR036749 -
Tsu04g02318 252 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Tsu04g02318 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Tsu04g02318 252 Gene3D - 20 146 IPR036908 -
Tsu04g02318 252 PANTHER EXPANSIN-B3 4 249 - -
Tsu04g02318 252 SMART dpbb_1 63 141 IPR007112 -
Tsu04g02318 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Tsu04g02318 252 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 249 - -
Tsu04g02318 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02318 Tsu-Chr4 25864086 25890116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02318 9 250 Expansin Gene Family AT4G17030 53.719 5.66e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02318 - - gmx:100779487 374.4