Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02288 ATGAAGTGTTTCTTCTTCAAAGAAAAATCCAAATCAGCCCCAGAATtacagaacaagaagaagaacaagaatcCAGCTTTCAACCGCGCAACTAACTCAACTGGTTCTGTATCTTCTCCCAGAAGTGTGAAGGATTTGTATAGAGAAAAAGAACATACTTTTAGAGTTTTCAGTCTTCAAGAACTAAGAGATGCTACCAATGGTTTCAATAGGATGCTCAAGATTGGTGAAGGAGGTTTTGGAAGTGTTTATAAAGGAACAATTTTGCCACCAAATGGACAAGGTGACCCAATTATAGTTGCTATCAAAAGGCTTAACACTCGTGGATTTCAGGGTCATAAGGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTggttaagcttttgggatattGCTCTGTAGATGGAGAAAGAGGAATCCAACGGCTATTGGTGTATGAGTTCATGCCAAACAGGAGCTTGGAAAATCACCTTTTCAGTAGAACTTTACCAACCCTTCCATGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTGAAGGATTAGCTTATCTACACGAGGGATTGGAGATACAGGTGATCTACCGAGATTTCAAATCTTCAAATGTCCTATTGGATGAGGATTTCCACCCAAAGCTCTCAGATTTTGGTCTTGCAAGGGAAGGGCCACAAGGGGATCAGACTCATGTATCAACTGCGGTAGTTGGCACACAAGGATATGCCGCGCCAGAGTATATTGAAACAGGTCATCTCAAAGTCCAGAGTGACATGTGGAGTTTTGGGGTCGTACTCTACGAGATCCTCACAGGAAGACGATCATTAGAAAGGAACCGTCCAACAGCTGAACAGAAGCTATTAGATTGGGTTAAACAGTATCCTGCTGACAGTAACAGATTCAGCATAATTATGGACCAGCGTCTTAGGAACCAATATCCGATCGCTGCAGCGCGCAAAATAGCAAAGTTAGCCGATAGTTGCTTGAAGAAGACTCCAGAAGATAGACCATCTATGAATCAGATAGTGGAAGGGTTGAAACAAGCATTGCAATATTCAGAAATGTCAAACACTCCTCATGATAATGCTGAATCGTCTCGGTCTAAATCGGTTCAGAGAAGTAAATAG 1140 0.4018 MKCFFFKEKSKSAPELQNKKKNKNPAFNRATNSTGSVSSPRSVKDLYREKEHTFRVFSLQELRDATNGFNRMLKIGEGGFGSVYKGTILPPNGQGDPIIVAIKRLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQRLLVYEFMPNRSLENHLFSRTLPTLPWKTRLEIMLGAAEGLAYLHEGLEIQVIYRDFKSSNVLLDEDFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSNRFSIIMDQRLRNQYPIAAARKIAKLADSCLKKTPEDRPSMNQIVEGLKQALQYSEMSNTPHDNAESSRSKSVQRSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02288 379 ProSitePatterns Protein kinases ATP-binding region signature. 75 103 IPR017441 GO:0005524
Tsu04g02288 379 Pfam Protein tyrosine and serine/threonine kinase 74 349 IPR001245 GO:0004672|GO:0006468
Tsu04g02288 379 PANTHER OS01G0588500 PROTEIN-RELATED 16 376 - -
Tsu04g02288 379 Gene3D Phosphorylase Kinase; domain 1 49 154 - -
Tsu04g02288 379 MobiDBLite consensus disorder prediction 19 41 - -
Tsu04g02288 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 16 376 - -
Tsu04g02288 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Tsu04g02288 379 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Tsu04g02288 379 MobiDBLite consensus disorder prediction 356 379 - -
Tsu04g02288 379 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g02288 379 CDD STKc_IRAK 75 352 - -
Tsu04g02288 379 MobiDBLite consensus disorder prediction 14 42 - -
Tsu04g02288 379 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02288 Tsu-Chr4 25560131 25563891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02288 3 350 Glycoside Hydrolase AT3G07070 43.575 2.88e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g02288 PK_Tyr_Ser-Thr 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02288 - K00924 gmx:100305403 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02288 04 25560131 25563891 Tsu04g02288 04 25560131 25563891 ECH
Tsu05g00446 05 3360593 3364120 Tsu04g02288 04 25560131 25563891 PCT