Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02271 ATGGCACTCTCTCTTTTGTGTATTGTTCTCCTTGCCACCTTTCTTTTCATGCAAACTATGGCAGATACTTCATGCACCGATTGCTTTGTTCAATCCCGTGCATCATTTTACCCAAACTCTGACGAAAAAGGCACAGATGCTGGTGCATGTGGATTTGGGTCCTTTGGTGCTACCATTAATGGCGGAGATGTATCGGCTTCATCTAGTCTTTATCGAGATGGAGTTGGCTGTGGCGCATGTTACCAGGTGAGGTGTACCAATAGTGTTTATTGCTCAGGCGACGGTGTCACTATAGTTTTAACTGATCAAGGCTCAGGTGATAATACTGATTTCATTCTTAGCCAACGAGCCTTTGGTGGGATGGCTCAGAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGTGTAGCTGATATTGAATACAGACGTGTTTCATGTAATTACCCAAACAAAAACATTACAATTAAGATCGACGAAAGCAGCAGCAACCCTAATTACTTGGCTTTTGTCTTATGGTTTCAACAAGGAAGAAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGGATCATGGCGCTGTCTGGACTACTACATCTCCACCAAGTGGGCCTTTGTCTTTAAGGATGTTGTTTAGTACTGAAGATGGAGACGATACATGGGTCGTTCCAGTTAATAACATACCAGAAGACTGGAAGGCTGGAGAAACATATGACTCAGGAGTACAAGTAGACCAGTAG 765 0.4379 MALSLLCIVLLATFLFMQTMADTSCTDCFVQSRASFYPNSDEKGTDAGACGFGSFGATINGGDVSASSSLYRDGVGCGACYQVRCTNSVYCSGDGVTIVLTDQGSGDNTDFILSQRAFGGMAQNKDAAASLLALGVADIEYRRVSCNYPNKNITIKIDESSSNPNYLAFVLWFQQGRRDITAVQLCETQNFVCKLLDRDHGAVWTTTSPPSGPLSLRMLFSTEDGDDTWVVPVNNIPEDWKAGETYDSGVQVDQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02271 254 Gene3D - 16 147 IPR036908 -
Tsu04g02271 254 SUPERFAMILY Barwin-like endoglucanases 15 150 IPR036908 -
Tsu04g02271 254 PANTHER EXPANSIN-B3 6 253 - -
Tsu04g02271 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 6 253 - -
Tsu04g02271 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Tsu04g02271 254 Gene3D - 148 252 IPR036749 -
Tsu04g02271 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Tsu04g02271 254 Pfam Lytic transglycolase 66 140 IPR009009 -
Tsu04g02271 254 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Tsu04g02271 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Tsu04g02271 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Tsu04g02271 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tsu04g02271 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Tsu04g02271 254 Pfam Expansin C-terminal domain 153 236 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02271 Tsu-Chr4 25339095 25341108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02271 9 250 Expansin Gene Family AT4G17030 43.033 5.12e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02271 - - gmx:100794009 442.965