Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02267 ATGATGAAGTGCATAGCGctTGGAGCAGTGGAGTTCCTCGGCAAACCACTCTCCGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGTAAGTGCGCTGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGTCTCCATTTTGCAGCTCCAAACGGACAACAATCAACACGAAAGTAGAGCCTCAGTTGAGTTAGAGAAAGTATCCCAGTTTTCTGACAATGACCATGAGCATTATCCAGCTCCTTCAACCCCACAATTGAAACAGGTGGAAAGATTACTAGATGATGGGGATTGTCAAGAGCAGACTAATTGCTCCACAGAAAAAGAAAGTGGGGAACACGATGGAGAATCTAAATTCGTCGAAACTACTTGTGAAAATTTGAATGCTGAAAGTACTCCTCAACAAAGGAAATCTGAAGTTACTCTGGTTCAAAAGGAAGCAGAGGAATTTGCCGACGCTTCTAAGTGTGAGAATGCTGTTTCACCACATCCACAAAATGAGAAGGTTCTCAATAATAGTGAAAGTAATACAACGTCTGCGAATAAAGTAGGTGTTCGTAGTCATAAATGCGAGATAAAAGCTAATCGGAAGAAAATGAAAGTAGACTGGACGGCTGAGCTACacaaaaaatttgtgaaagcagTAGAACAACTAGGCATTGATCACGCAATTCCTTCTCGCATATTGGATATAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTGCCAAAGCAAGAAGATCGGAAATGGCTAAATCAAAGAGATCCAACACAAAAGAGCTATTGTATTCAAAGGCCAATTATGCCTGGTCCTCCATCATATTATTCTAACCATACCCTTCCTCCACCTCCTTTATATCCTATGTGGGGACAATCTGGAACTCAAATGGCTGGAATGCAGGTTTGGGGCCCTTCTGCTTATCCCTTGTGGCAGCCTTCAGAAACATGGCACTGGCAACCATTTCCGGCGATGCATGCAGATACATGGGGCACGCCGGTGTTACCACCACCTCAACCTCCTTGCTATTCCTATTCTCAGAATACACCTGCAGTGAGTAACGCTAATGCAATGGATTACATGTTTGACATGCCCCACAGTTCCTTTGACGATTATCCGGCCGAGGAAGTTATTGACAATGTTATGAAGGAGGCAATAAGTAAGCCATGGCTACCTTTGCCGATAGGCCTCAATCCTCCTTCCACAGATAGTGTATTAGCTGAGCTTTCCAGGCAAGGCATTTCCAACATCCCTCCAAGCAACAATGGTTCTATTCCCAATTGA 1353 0.4316 MMKCIALGAVEFLGKPLSEDKLRNIWQHVVHKAFNAGVSALSESLKPVKESVVSILQLQTDNNQHESRASVELEKVSQFSDNDHEHYPAPSTPQLKQVERLLDDGDCQEQTNCSTEKESGEHDGESKFVETTCENLNAESTPQQRKSEVTLVQKEAEEFADASKCENAVSPHPQNEKVLNNSESNTTSANKVGVRSHKCEIKANRKKMKVDWTAELHKKFVKAVEQLGIDHAIPSRILDIMKVEGLTRHNVASHLQKYRMHKRHILPKQEDRKWLNQRDPTQKSYCIQRPIMPGPPSYYSNHTLPPPPLYPMWGQSGTQMAGMQVWGPSAYPLWQPSETWHWQPFPAMHADTWGTPVLPPPQPPCYSYSQNTPAVSNANAMDYMFDMPHSSFDDYPAEEVIDNVMKEAISKPWLPLPIGLNPPSTDSVLAELSRQGISNIPPSNNGSIPN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02267 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 263 IPR017930 -
Tsu04g02267 450 Gene3D - 203 265 - -
Tsu04g02267 450 ProSiteProfiles Response regulatory domain profile. 1 30 IPR001789 GO:0000160
Tsu04g02267 450 MobiDBLite consensus disorder prediction 108 127 - -
Tsu04g02267 450 MobiDBLite consensus disorder prediction 168 193 - -
Tsu04g02267 450 Pfam Myb-like DNA-binding domain 210 259 IPR001005 -
Tsu04g02267 450 SUPERFAMILY Homeodomain-like 206 264 IPR009057 -
Tsu04g02267 450 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 447 - -
Tsu04g02267 450 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677
Tsu04g02267 450 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 447 IPR044825 GO:0003700|GO:0045893
Tsu04g02267 450 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02267 Tsu-Chr4 25268905 25272782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02267 2 447 Response Regulator Gene Family AT4G18020 45.570 1.87e-93 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu04g02267 Myb_DNA-binding 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02267 - - mtr:MTR_4g098870 775.007