Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02251 ATGGCACAGGCATCACTGCCACCAGGTTTTCGTTTTCGTCCAACCGATGAAGAACTGATTGGATACTATCTTAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGATGTTATCCCAATGATTGATTTTTACAAATTTGATCCATGGGAGTTACCTGAGAAATCATTTCTACCAAAACGAGATTCAGAATGGTTTTTCTATTGTCCGCGAGATCGAAAGTACCCAAATGGATCAAGAACAAATAGAGCTACTAAAGCTGGCTATTGGAAAGCCACCggaaaagagagagagatagtGTGCCAGTGTACTTCATCCACCATCACAGGTTACTGCAAAACACTTGTTTTCTATCTTGGAAGGGCCCCTTTAGGGGATAGAACTAATTGGATCATGCATGAGTACCGCTTCGCTGATGATCTTAGCCGAGACTTTAAGGGTGGTTTTGCTTTGTGCCGAGTTATTAAAAAGAATGAGAAGAGCAAGAGGGCTGAAAAAAGTTCCAATGATGTTACTTCTCAAGCAAGTTACCTGAATAATGATAGTGGATCACAAAATATTGCTCCAATTGCTGAGTTTAACAATGTATCGATAGAAACTAATCCTTCAAACTTCTGGATCTCTCCTGATATGATTCTTGATTCTTCAaagGAGTATACTCAAGTACAAGATGCAGTGTCTGAATATTTTCCAAGGTGTCACTCACCAAGGCAATCATTGGAACATACAACAATTTCACCTAGTTTATCCTACTCAAATTTTACTGGTGAAATTGAATTTTCTGATAATAGTAATACAAGTCAAATTGAATTCATGTCATCTTACTCAAGTCAGGGAAATTTCATGGACTATTGTGGAAATTGGAATGTTCCTTATGAGGTTTATGATCAAATTAATTCTGTCTCATATCCAGAGCCTTTCTAA 921 0.367 MAQASLPPGFRFRPTDEELIGYYLKRKVEGLEIELDVIPMIDFYKFDPWELPEKSFLPKRDSEWFFYCPRDRKYPNGSRTNRATKAGYWKATGKEREIVCQCTSSTITGYCKTLVFYLGRAPLGDRTNWIMHEYRFADDLSRDFKGGFALCRVIKKNEKSKRAEKSSNDVTSQASYLNNDSGSQNIAPIAEFNNVSIETNPSNFWISPDMILDSSKEYTQVQDAVSEYFPRCHSPRQSLEHTTISPSLSYSNFTGEIEFSDNSNTSQIEFMSSYSSQGNFMDYCGNWNVPYEVYDQINSVSYPEPF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02251 306 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 186 - -
Tsu04g02251 306 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 165 306 - -
Tsu04g02251 306 Pfam No apical meristem (NAM) protein 7 135 IPR003441 GO:0003677|GO:0006355
Tsu04g02251 306 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Tsu04g02251 306 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Tsu04g02251 306 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Tsu04g02251 306 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 165 306 - -
Tsu04g02251 306 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02251 Tsu-Chr4 25087143 25089277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02251 1 258 NAC Transcription Factor Family AT4G17980 58.209 1.58e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu04g02251 NAM 1.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02251 - - mtr:MTR_4g098630 501.13