Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02247 ATGGGTTGTACGGTGAGAGAAAAACACATCAGAGCTAATCGCCGACCACGATCGTCGGCGGCGGCGAAACCTGATTCCGATTCTTCCGATAACAAAGATGCAATTTCCAAATCCATTGCTGAGTCTGGTCTCAAACCCTTCAAATACGATATTTCTTCTTCTAACGGTCTTATTCCTCTTCCTAATCCAAACCCTAATTCGGATGAATCTGGTTGGGGTTATTGTACTGAGGAACAATTGGAAGAGATTCTTTTGAAGAATTTGGAATTTGTTTATAATGAAGCTGTTTCAAAAATTGTTGCTTTAGGTTATGCGGAAGATGCTGCTTTGAAAGCTATATTGAGAAATGGTCATTGTTATGGTGGTATGGATGTTTTGACAAATATTTTGCATAATTCTTTAGCGTATTTGAATAGTAATGGTAGTGTTGTTTCTATTGGTGCTGGTTTTGGtggtagtggtggtggtggtggtgatggtaATAATGGGAATTCTGATGAGGCTGAGCTTGTTTTCTCTGATTTGAGACAGTTAGAGGAATACTCTTTGGCTGGTATGGTTTGTTTGTTGCAGCAGGTTAGACCTAATTTGAGTAAAGGTGATGCAATGTGGTGTTTGCTTATGAGTGATCTTCATGTGGGGAAAGCTAGTACTATGGAGATTCCTGTGCCGGGGAGTGGGGGTGCTACTCGTACCCCTGCTATGGTTGAGTCTGGTCAGTCTGGCCGCAGTTCGGTTGGTGTTAGGGCTCCTCCCTTGTGTAGGTTTCATGGAGGGTGGGGATTTGGAAATGGGGATTATCCTGTGAATGGGATATTTTCGTGTGGTCCGGATTTGCAAAGGGAGATTGAGTTTCCGAAAAGGTTTGATCTTTCGCCTACAatgaaggtcttgttgaagaGAAATGTTACAATGTTTGCTGCTGGTTTTAGGGCAAATACCAAACAGCTGCAGACGCAAGGGAAGGTGAAGGCTAACTTTCCTGGTGGTCGTAGTGCTGTGTCTGGTTTGGATTCTCCGGTTGTGTCTTCTGGGGCTGAAGTCACGGTTGATCAGTGTGGACATTCTCGGTTTCCTGATAACCAAGATGCTGTGAACTCGGTGCTGAGTAAATTTCGTGACTTGAATCTTGATGAGAATTTGGAGTTTGTGGCAGAGGATCAGAAGGATGAGGTGATAGTAAGTATATTTCATCAGATAAAGGATTTGGAGAAACAGGCTAAGGAGCGAAAAGAATGGGCTCATCAGAAAGCAATGCAAGCGGCAAAGAAGCTAAGCAGTGATTTGACTGAGCTGAAAACGTTACGGATGGATAGAGAGGAGACTCAGAAATTGAAGAAAGGGAAACAAGCACTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCTTTGAGAAAGGCTAGCGGACAAGTGGACCGTGCAAATGGAGCTGTGAGAAGATTAGAGACTGAGAATGCTGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCGAAAAGGGAGAAAAAATGGTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAAAAGGAGATTTCCAATGAGAAAGAGAAGATATTGGAGGCACAAGAAGTGCTGGCTCAGAATACACAGCGTCAAAAAGAAGCCGAGGTTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGATGCCTTGGCACTAGTTGAGGAGGAGCGCCGTGCCAAGGAAACAGCTGAATCAAACAATAAGAGGGGGTTTGAGGCTTTGCGTCTGAAGATAGACATAGATTTCCAGCGCCACAAGGATGATCTAAGCAGACTTGAGCACGATCTTTCGCGCCTTAAAGCATCTGTTCAATCTGCTGTGCTGCACCATCAATCAAATACTACACCTATAAGTGACTTTGAGGGTACAAAGCCCCAAAGAGAGACAATTGCTAAGCTGCTTCTGGAATTGGATAACCTGGAGGATTTATCAGAAAATGAAGTTAGTAACAACAGAGAATGCATTATATGCATGAAAGATGAAGTCTCCATTGTTTTCTTGCCATGTGCTCACCAAGTCATGTGTGCTAAATGCAGTGATGAGTATGGGAAAAAGGGCAAGGTTGCTTGTCCTCGCTGCCGAGTTCAAATACAACAGAGAATCCGCGTATTTGGGGCATGTTCTTAG 2205 0.4259 MGCTVREKHIRANRRPRSSAAAKPDSDSSDNKDAISKSIAESGLKPFKYDISSSNGLIPLPNPNPNSDESGWGYCTEEQLEEILLKNLEFVYNEAVSKIVALGYAEDAALKAILRNGHCYGGMDVLTNILHNSLAYLNSNGSVVSIGAGFGGSGGGGGDGNNGNSDEAELVFSDLRQLEEYSLAGMVCLLQQVRPNLSKGDAMWCLLMSDLHVGKASTMEIPVPGSGGATRTPAMVESGQSGRSSVGVRAPPLCRFHGGWGFGNGDYPVNGIFSCGPDLQREIEFPKRFDLSPTMKVLLKRNVTMFAAGFRANTKQLQTQGKVKANFPGGRSAVSGLDSPVVSSGAEVTVDQCGHSRFPDNQDAVNSVLSKFRDLNLDENLEFVAEDQKDEVIVSIFHQIKDLEKQAKERKEWAHQKAMQAAKKLSSDLTELKTLRMDREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKREKKWLKKLLAWEKQKAKLQKEISNEKEKILEAQEVLAQNTQRQKEAEVKWKEELKAQEDALALVEEERRAKETAESNNKRGFEALRLKIDIDFQRHKDDLSRLEHDLSRLKASVQSAVLHHQSNTTPISDFEGTKPQRETIAKLLLELDNLEDLSENEVSNNRECIICMKDEVSIVFLPCAHQVMCAKCSDEYGKKGKVACPRCRVQIQQRIRVFGACS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02247 734 Coils Coil 608 628 - -
Tsu04g02247 734 MobiDBLite consensus disorder prediction 1 35 - -
Tsu04g02247 734 SUPERFAMILY RING/U-box 662 726 - -
Tsu04g02247 734 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 733 - -
Tsu04g02247 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 731 IPR013083 -
Tsu04g02247 734 Coils Coil 460 501 - -
Tsu04g02247 734 Coils Coil 656 676 - -
Tsu04g02247 734 SMART ring_2 680 719 IPR001841 -
Tsu04g02247 734 Coils Coil 516 550 - -
Tsu04g02247 734 MobiDBLite consensus disorder prediction 18 34 - -
Tsu04g02247 734 PANTHER OS05G0141500 PROTEIN 1 733 IPR046934 -
Tsu04g02247 734 Pfam Zinc finger, C3HC4 type (RING finger) 677 725 - -
Tsu04g02247 734 ProSiteProfiles Zinc finger RING-type profile. 680 720 IPR001841 -
Tsu04g02247 734 Pfam Family of unknown function (DUF6592) 87 217 IPR046527 -
Tsu04g02247 734 Coils Coil 562 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02247 Tsu-Chr4 25071252 25076519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02247 680 730 C3H Transcription Factor Family AT1G73950 43.137 4.11e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02247 - - gmx:100777787 998.423