Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02242 ATGTTGTTTGGTTTGTTAGGTGGACAGAGTCAACTTGTGTGTTCTGGCTGTAGAAACCTTTTAATGTATCCAGTTGGAGCTACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCGCCGCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCAACAAGCGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAgCAAATCAGGTTGCACATGTCAATTGTGGTAACTGCAGGATGCTACTTATGTACCAATATGGAGCAAGATCAGTGAAGTGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGTTAGTATAATATATTTCTTGTTCGTTATATCGATTTATATGCACAATACTAGTATCGTGAACGAAGAGAAATTCGTTGAAAGAGTCTATGTTAGTTATGGTTTATAA 465 0.4065 MLFGLLGGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIIYFLFVISIYMHNTSIVNEEKFVERVYVSYGL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02242 154 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 50 79 IPR005735 -
Tsu04g02242 154 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 88 118 IPR005735 -
Tsu04g02242 154 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 11 41 IPR005735 -
Tsu04g02242 154 PANTHER PROTEIN LOL1 7 121 - -
Tsu04g02242 154 Pfam LSD1 zinc finger 14 38 IPR005735 -
Tsu04g02242 154 Pfam LSD1 zinc finger 91 115 IPR005735 -
Tsu04g02242 154 Pfam LSD1 zinc finger 53 77 IPR005735 -
Tsu04g02242 154 PANTHER PROTEIN LSD1 7 121 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02242 Tsu-Chr4 25022133 25025380 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Tsu04g02242 zf-LSD1 9.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02242 - - fve:101312543 234.958