Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02239 ATGGATTCCCgctcaccaccaccaccaccacaacaacCACCACATCAACAACAATCAACCATCATGGTGGGTCCCACATCTTACGCTCCAACAAACACTTCCATGATCAGCCCTAATTCCTCCGCCACCAACCTCATGGCACCCGCCACCGCTCGATTTCCTTTCTCCTCTTCTCAACAATCATCGGAACCACCATTCTCCGTCACTCACGATGCTCCTCCTTCTTCTCCGTCTACTCTTGCTAAGAAAAAACGTGGCCGTCCTAGGAAATACTCTCCTGATGGTAACATTGCTCTTGGTTTGGCTCCTACTCGTGTTTCTTCTCCTGCCGCTGCTACTTCCGCCTCCGCTGGTGATTCCGGTAACGCTGATGCTCCTCCTAAGAAACATAGAGGAAGACCTCCTGGTTCTGGCAAGAAACAGTTAGATGCGCTTGGTGCTGGTGGGACTGGATTCACTCCACATGTAATTGTGGTGGAGTCTGGCGAGGACATTACAGAAAAAGTTATGTCCTTTTTACATATAGGGCCTCGGACGGTTGTTATTCTTTCTGCAGTTGGTGCAATCAGCAGTGTAACCCTTCGACAGCCAACATTATCTGGTGGTGTTGCAAGATATGATGGCCAATATGAGATCATATCTTTATCAGGTGATATGCAGCTATCTGAAAATAATGGTGAGCAAAGCAGAACAAGCAGTTTATACGTTTCCCTTGCAGGCGCTGATGGGCGAGTTTTGGGAGGTGCTGTTGCTGGAATGCTAACTGCGGCGTCAGCTGTACAGGTCATTGTGGGTAGCTTTATAATGGATCAGAAAAAGTCAAGCTCGAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAAATTCTCAAATGTTGAACTTCGGAGCTCCTACGACTCCAACTAGTCCAACCTCTCAAGGGCCTTCAACCGAGTCCTCGGAGGAAAACGATCACAATAGTAACTTTAGTAGGGGTCCTGGAATCTACAATAATGCTAACCAGCCTGTTCATAATAACATGCAGCAGATGTACCACCATCCACTATGGGCTGGTCAATCTCATCAGTGA 1068 0.4644 MDSRSPPPPPQQPPHQQQSTIMVGPTSYAPTNTSMISPNSSATNLMAPATARFPFSSSQQSSEPPFSVTHDAPPSSPSTLAKKKRGRPRKYSPDGNIALGLAPTRVSSPAAATSASAGDSGNADAPPKKHRGRPPGSGKKQLDALGAGGTGFTPHVIVVESGEDITEKVMSFLHIGPRTVVILSAVGAISSVTLRQPTLSGGVARYDGQYEIISLSGDMQLSENNGEQSRTSSLYVSLAGADGRVLGGAVAGMLTAASAVQVIVGSFIMDQKKSSSSMVKSGPSSAPNSQMLNFGAPTTPTSPTSQGPSTESSEENDHNSNFSRGPGIYNNANQPVHNNMQQMYHHPLWAGQSHQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02239 355 CDD DUF296 153 267 IPR005175 -
Tsu04g02239 355 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Tsu04g02239 355 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Tsu04g02239 355 MobiDBLite consensus disorder prediction 1 147 - -
Tsu04g02239 355 MobiDBLite consensus disorder prediction 275 335 - -
Tsu04g02239 355 MobiDBLite consensus disorder prediction 1 15 - -
Tsu04g02239 355 MobiDBLite consensus disorder prediction 16 76 - -
Tsu04g02239 355 Gene3D - 154 280 - -
Tsu04g02239 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Tsu04g02239 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 325 IPR039605 GO:0003680
Tsu04g02239 355 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Tsu04g02239 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 47 325 - -
Tsu04g02239 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02239 Tsu-Chr4 24998744 25004624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02239 81 355 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 48.243 1.47e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02239 - - mtr:MTR_4g098460 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00477 05 3704679 3707228 Tsu04g02239 04 24998744 25004624 PCT