Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02238 ATGGCTGGTTTGGATTTAGGAAATGCATCAAGCTTTATGCAAAACCTTCACAGACAAAACTTACACCttcagcaacaacaacaacagcaacaccATCAACACCAGCACGATTCTGACGAACAGCAAGAGTCGAATcgtgttggtggtggtggtgcagCTCCCTTTTCATCAAACGATGAAGATGACCGAAGCCAAGGATTGGAGCTAGGTTCTGCAGCTGGTCCAGGCGACGTCGTGGGACGTCGTCCACGCGGCAGACCACCGGGATCGAAAAACAAGGCGAAGCCGCCGGTGATCATCACCCGTGAAAGCGCCAACACTCTGAGGGCTCATATTCTTGAAGTTGCTAGTGGCTCCGATGTGTTTGAATGTGTAACAACCTATGCTCGACGTCGTCAGCGTGGGATCTGTGTTCTAAGTGGAAGCGGAACCGTCACTAATGTAAGTCTCCGGCAACCGGCGGCGGCTGGTGGTGTTGTGACACTAAATGGAAGATTTGAGATATTGTCTTTATCTGGATCTTTTCTTCCTCCACCTGCTCCTCCCGGCGCGACGAGCTTAACGATTTATCTCGCCGGAGGACAGGGACAGGTGGTCGGAGGAAGTGTGGTTGGTGAACTTATCGCAGCGGGACCGGTGATCGTGATAGCGGCTTCTTTTACTAATGTAGCTTATGAGAGATTGCCTTTGGAGGAAGAGGAGCAAGTTCAGATTCAaggaggaggtggtggtggttcaCAAGGctctggtggtggtggtggtggcggcGGTGGAAATAACAATCCATTTCCTGATCCTTCATCTGGTTTGCCTTTTTTCAATCTGCCATTGAATATGCAAAATGTTCATCAGCTGCCTGTTGATGGTTGGGCGGGAAACAATTCAGCTGCACGTCAGCCTTTTTGA 906 0.4426 MAGLDLGNASSFMQNLHRQNLHLQQQQQQQHHQHQHDSDEQQESNRVGGGGAAPFSSNDEDDRSQGLELGSAAGPGDVVGRRPRGRPPGSKNKAKPPVIITRESANTLRAHILEVASGSDVFECVTTYARRRQRGICVLSGSGTVTNVSLRQPAAAGGVVTLNGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELIAAGPVIVIAASFTNVAYERLPLEEEEQVQIQGGGGGGSQGSGGGGGGGGGNNNPFPDPSSGLPFFNLPLNMQNVHQLPVDGWAGNNSAARQPF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02238 301 PIRSF ESCAROLA 7 301 IPR014476 GO:0003680
Tsu04g02238 301 MobiDBLite consensus disorder prediction 21 98 - -
Tsu04g02238 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 222 IPR005175 -
Tsu04g02238 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 301 - -
Tsu04g02238 301 MobiDBLite consensus disorder prediction 234 270 - -
Tsu04g02238 301 CDD DUF296 109 192 IPR005175 -
Tsu04g02238 301 Gene3D - 108 239 - -
Tsu04g02238 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 239 - -
Tsu04g02238 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 301 IPR014476 GO:0003680
Tsu04g02238 301 ProSiteProfiles PPC domain profile profile. 105 241 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02238 Tsu-Chr4 24974675 24975580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02238 1 301 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 65.190 1.45e-97 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02238 - - pvu:PHAVU_003G230600g 360.533