Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02237 ATGGAGGAAATCAACACTACACCAATGAACGTACCAGCTGACACCAACTGGTTATCTGATTTGGAAATGGTGGAAGAATACATTTtatttgatgaagaagaagagtttCTCTCACATGACATAGGTAGTGCCTTTGAGGAACAGAGACAAACCCTGCAACAATGTTTAACTACAGAATTCATTTCCACAACAATGAGCGAAATTTTCACCGATGAAACAAATTTTGAGTCTTTTGATCACTTTGATTTTGAGAAATTACCTAAAGAGTTGAAAACAATTGATCACAGTAGTAACAATGACCACATCACCGAAATTTTTTCGCCACAATTCTCTGCTTCACCACCCTCTATTCAGTCTCCTCAGATTTTGTCTTTCGACAATCCAAATCCAACAGAGTTTTATGGATTTGATCAAAAACAGAAAGAGATGGTGACTTCATTGTCATTGCAGGAATTGGGGAACACACATTTTTCAACTCAAATCTCAGACACGTCTtcgaaaaatcaaaacttggAAACTAAAACATCACAACGTAAGAGGCCTCGTGCTCACGGTTTGGATCATATCATGGCCGAGAGAAAACGAAGAGAGAATCTCAGCAAGAGTTTCATTGCTCTTGCAGCTCTCGTTCCAGGCCTAAAGAAGATGGACAAGGCTTCAATATTAGCTGATACAATCAAATACCTCAAAGAACTTAAAGAGCGTTTGGCAATTTTAGAAAAGCCGGGGAAGAAAACAAATGTAGATCAGTCCATGGTGGTTCCGACCAAACCAGCCATCTGTATTGACGAGTATTACGCATCATCTAATGAGAACACTGTAACTGAGAGATCTGCTAATGGTACTGCCACTGATCAATCAATCTTGAAGGTGGAAGCAAAAGTGTCAGGAAAAGATATGTTGATTCGGATCCACTGCCGAAAGCATAATGGACTTCTTGTTAAAATCATCACTGAGATTCAAAGTTATGAACTATTTGTTGTCAATAACAGTGTTTTAGGCTTTGGAGATTCTATCCTTGACATTACCATCATTGCTGAGATTGGTGAAGGGTACAACTTGAGCATAAAGGGACTTGTGAAGAACCTATGCATTGCAGCATTGGAGTTTATGTCATCATAA 1122 0.377 MEEINTTPMNVPADTNWLSDLEMVEEYILFDEEEEFLSHDIGSAFEEQRQTLQQCLTTEFISTTMSEIFTDETNFESFDHFDFEKLPKELKTIDHSSNNDHITEIFSPQFSASPPSIQSPQILSFDNPNPTEFYGFDQKQKEMVTSLSLQELGNTHFSTQISDTSSKNQNLETKTSQRKRPRAHGLDHIMAERKRRENLSKSFIALAALVPGLKKMDKASILADTIKYLKELKERLAILEKPGKKTNVDQSMVVPTKPAICIDEYYASSNENTVTERSANGTATDQSILKVEAKVSGKDMLIRIHCRKHNGLLVKIITEIQSYELFVVNNSVLGFGDSILDITIIAEIGEGYNLSIKGLVKNLCIAALEFMSS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02237 373 Gene3D - 168 247 IPR036638 GO:0046983
Tsu04g02237 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Tsu04g02237 373 MobiDBLite consensus disorder prediction 158 184 - -
Tsu04g02237 373 SMART finulus 189 238 IPR011598 GO:0046983
Tsu04g02237 373 MobiDBLite consensus disorder prediction 158 172 - -
Tsu04g02237 373 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 10 372 - -
Tsu04g02237 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 245 IPR036638 GO:0046983
Tsu04g02237 373 Pfam Helix-loop-helix DNA-binding domain 188 232 IPR011598 GO:0046983
Tsu04g02237 373 PANTHER BHLH TRANSCRIPTION FACTOR 10 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02237 Tsu-Chr4 24935353 24937593 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02237 15 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 31.319 1.20e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02237 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02237 - - mtr:MTR_4g098035 367.466