Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02235 ATGGAAGAAATCAACAACAAACCAACGAACTCATCTTTTCAGTCTCTGATTCTGTCTTTTAACAATCCCCTAAACTCACCTCCTACTCAAACTCCCGAAGGGTcgtcaaaaaatgaaaacttggAAACAAAAATCTCACAAAGAAAAAGGTCTCGAACTCATAGTCATGATCATATCATGGCTGAAAGAAAACGAAGAGAGAAACTCAGCCAGAGTTTCATTGCTCTTGCAGCACTTGTTCCTAACCTTAAAAAGATGGACAAACAATCTGTATTAACTGACTCTATCAAATACGTGAAAGAGCTTAAACAACGTTTGGAAGAACAGAACAAGAAAACCTATGCAGAGTCAGTGGTTGTTATGAACAAACAAGACCTATGCATCAATGATGATAATTCATCATGTGATGAGAGTAGTGAAGGTGCTTCTGATGCCAATGAATCACTCTTGCAAGTGGAAGCAAAAGTTTCAGAAGGGTTAGCGTTCGTGGCCGTGGGACGGAGGCGCGAGGCTTTGGGTCAGCTTGCTTTTGGGTCGAGTTTGAGACTTAAGTGGACCGAGCGCTCAATGCCGAATTGGGCGTGTGGCCATAACAAGCCGCCTTTGAAACAAGCTCGTTATATCGATGCCAAGAAGTTGTTGTCGTGCAAGATGCAGCgTAATATGGTGACGTTACAAGAGAGGCTTCTCAAGATTTCTCAAAAGAAGCAGAAGACTGTTAATGCAAGTGGTGCTGGCGGATCTTTGAGTGCGGTGGTTGaggatgatgttgttgttgtggacCAGTCTATAAAGACTAGGAAGCTAAAGAAGGGGGCCTCATCAGAGGTTGAGGATCTAGAGAGAGTCGAGAGGACCCGGGTGGACCTAGTATTGGGGGACAAGGAGGTCGACGGTTCTGGAGATGTGCCCATTGCCAATTTTATTCTACCCGCCTGTATGGGGAACAGGGGGTTGCTTGATAGGAATATCGCGGTCCATGTATCTCCTGCTAGTGTCTCCATTGTCAACGATTTGGGACCTGAAAGCCTCAAGAATGAAATAGCAGCAGACACAGTGGCTGTTCTCCGGATCCTCGAGGTGGTCAACATTCTGAATGGTCGAGAGTGTCAATATTTGAAGGATAAAGGCGAACTCCAAGAGCGGGTTGTTAAGCTCAAAAGGAAGCTAACGAAGTTGAAGAATGACTTTCTCAACTATAAAGAGAAGTTCTTGGTGCAGGCTGATATAATCCTCGACAATACCATGAAGCAGGAAGAGATTAAGGAGTTGCGGAGGAGTCAGGCGACTTGGGTTGAACAAAAAACTAAATTGGAGGATTTTCTTAAGTCTTCTGGGAATTGGACCTTGGATAGGGAAGTATCACCAATTAATGGGTCTGACGAGTTGGCAGGACTGAATCGAGCAACATTGATCGCCAAGATCCACAACTTGGAGGGTGAGATGCTCAACTCGGCCCAAGAAAGTTTTGACAATGCCCTTGCCCAAGTGAAGTGTTTGAACCCTGAAATCGAGTTAAAGACTGAGGGCATGAGTGTGTTCATGGTCATTGATGGTGATCACCTAACCCTTCCTGTCGGGCAAGATGGATCCGGAGCAGAAGATGTTTGA 1611 0.4395 MEEINNKPTNSSFQSLILSFNNPLNSPPTQTPEGSSKNENLETKISQRKRSRTHSHDHIMAERKRREKLSQSFIALAALVPNLKKMDKQSVLTDSIKYVKELKQRLEEQNKKTYAESVVVMNKQDLCINDDNSSCDESSEGASDANESLLQVEAKVSEGLAFVAVGRRREALGQLAFGSSLRLKWTERSMPNWACGHNKPPLKQARYIDAKKLLSCKMQRNMVTLQERLLKISQKKQKTVNASGAGGSLSAVVEDDVVVVDQSIKTRKLKKGASSEVEDLERVERTRVDLVLGDKEVDGSGDVPIANFILPACMGNRGLLDRNIAVHVSPASVSIVNDLGPESLKNEIAADTVAVLRILEVVNILNGRECQYLKDKGELQERVVKLKRKLTKLKNDFLNYKEKFLVQADIILDNTMKQEEIKELRRSQATWVEQKTKLEDFLKSSGNWTLDREVSPINGSDELAGLNRATLIAKIHNLEGEMLNSAQESFDNALAQVKCLNPEIELKTEGMSVFMVIDGDHLTLPVGQDGSGAEDV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02235 536 Pfam Helix-loop-helix DNA-binding domain 58 102 IPR011598 GO:0046983
Tsu04g02235 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Tsu04g02235 536 PANTHER BHLH TRANSCRIPTION FACTOR 25 158 - -
Tsu04g02235 536 SMART finulus 59 108 IPR011598 GO:0046983
Tsu04g02235 536 Coils Coil 376 403 - -
Tsu04g02235 536 MobiDBLite consensus disorder prediction 18 41 - -
Tsu04g02235 536 Coils Coil 92 112 - -
Tsu04g02235 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 112 IPR036638 GO:0046983
Tsu04g02235 536 MobiDBLite consensus disorder prediction 18 64 - -
Tsu04g02235 536 Gene3D - 40 116 IPR036638 GO:0046983
Tsu04g02235 536 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 25 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02235 Tsu-Chr4 24922184 24924494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02235 50 158 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.558 1.34e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02235 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02235 - - var:108333272 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02235 04 24922184 24924494 Tsu04g02235 04 24922184 24924494 ECH