Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02234 ATGGAAGAAATCAACAACACACCAATGAACACATCAGAAATCAACAAATGGTTATCTGATTTGGAAATGGATGAATACAATTTATTTCCTGAGGAATGCAACCTTAATTTTCTAGATGCTGATGAGGAAGAGTTTCTTTCACATGACATAGTTACTACTGTCTTTCAAGAACAAcaaacccaacaacaacaacaacctttgACTTCAGAGTCAACAGCTCTCAACAACTCATTCACTGATGAAACCAATTTTGAGTCTTTtaacattgattttgaaattgagagACCAATCAAGCAGCTGAAAACAACTAATGACAGTGACAAATTCACTGAAACTTTGtcacccaaactttctccatcATCATCTAACTCATCATTTCAGTCTAGGATTCTGTCTTTTGACAATTCCCCAAACTCACCTCCTACTATCAACACCCCCCAAATTTATGGTTTTGACCCTACCTTGAACTCAAAACATAACGAAACAGAGTCATTGTCACCACCCCAATTTGGAAACATACATGTTTCAACTCAAATTCCAAAAGGGTcatcaaaaaatgaaaactttgaAACAAAAAACTCACAAAACAAAAGGTCTAGAAATCATGGTCATGATCATATCATGGCTGAAAGAAAACGAAGAGAGCAACTCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTAATCTAAAGAAGATGGACAAAGCTTCTGTATTAACTGACTCAATCAAATACATGAAAGAGCTTAAACAGCGTTTGGAAGTTTTGGAAGAAAAGAACAAGAAAACAAATGCAGAGTCGGTGGTCGTTATGAACAAACAAGACATATGCATCAATGATGATAATTCATCATGTGATGAGAGTATTGAAGGTGCTGCTATTGATGCCAAAGAATCAGTCTTACAAGTGGAAGCAAGAGTGTCAGGGAAAGAGATGCTGATTCGGATTCATTGCCAGAAGCACAAGGGACTTATTGTTAAAATCATGGCTGAAATTCAAAGGTTTCAATTATTTGTCGTCAATAGCAGTGTCTTACCCTTTGGAAATTCTATACTCGACATTACTATAATTGCTCAGaTGGGTGAAGGGTACAAGTTGAGCATTAAGGAACTTGTGAAGAACCTGCGGATGGCTACATTGAAGTTTATGTCATCATAG 1161 0.3419 MEEINNTPMNTSEINKWLSDLEMDEYNLFPEECNLNFLDADEEEFLSHDIVTTVFQEQQTQQQQQPLTSESTALNNSFTDETNFESFNIDFEIERPIKQLKTTNDSDKFTETLSPKLSPSSSNSSFQSRILSFDNSPNSPPTINTPQIYGFDPTLNSKHNETESLSPPQFGNIHVSTQIPKGSSKNENFETKNSQNKRSRNHGHDHIMAERKRREQLSQSFIALAALVPNLKKMDKASVLTDSIKYMKELKQRLEVLEEKNKKTNAESVVVMNKQDICINDDNSSCDESIEGAAIDAKESVLQVEARVSGKEMLIRIHCQKHKGLIVKIMAEIQRFQLFVVNSSVLPFGNSILDITIIAQMGEGYKLSIKELVKNLRMATLKFMSS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02234 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 267 IPR036638 GO:0046983
Tsu04g02234 386 PANTHER BHLH TRANSCRIPTION FACTOR 11 385 - -
Tsu04g02234 386 SMART finulus 207 256 IPR011598 GO:0046983
Tsu04g02234 386 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 11 385 - -
Tsu04g02234 386 Pfam Helix-loop-helix DNA-binding domain 206 250 IPR011598 GO:0046983
Tsu04g02234 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Tsu04g02234 386 MobiDBLite consensus disorder prediction 106 190 - -
Tsu04g02234 386 MobiDBLite consensus disorder prediction 102 205 - -
Tsu04g02234 386 Coils Coil 240 267 - -
Tsu04g02234 386 MobiDBLite consensus disorder prediction 191 205 - -
Tsu04g02234 386 Gene3D - 186 267 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02234 Tsu-Chr4 24897834 24910202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02234 95 384 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.667 4.70e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02234 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02234 - - gmx:100788128 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00487 05 3823385 3825915 Tsu04g02234 04 24897834 24910202 PCT