Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02233 ATGGAAGAATCATGGACTAATTGGTTATGTGATATGGAACCAGATGATTACAGTTTCATCAACCAATCAAGCATTAACACAGACATTAATGTTAGTAGTAATTTAGAGAGACCTTCCAAATTACTCAAAACAGCTTCTTCTTCCACTTGCTCATACATTCTTACATTTGAAAATGAGAATCCACCACCAACAAAGGTTGAACCAGCTTTGAAGACAAAAACCAAAGTTGTGAACTCAAAGAATGAACAAAGAAGGGTTAATACTCAAGAGAGCAACAAGAAGAAGAGTACATTTTCCAAATCTACAAGTCATCACACACCAGATCATATAATTGCTGAGAGATTAAGGAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCACTTATTCCAAACCTCAAAaagATGGACAAAGCCTCTGTATTAGGTGATGCTATAAAGTATGTAAAGGAGCTTAAAGAGCAAGTGAAAGTGTTGGAGGaacaaagcaaaagaaaaagtgTAGAATCAGTTGTGGTTGTGAAGAAATTGTCTCAACTTTCTGTGGATGAAGATGTCTCAGACACTTCCTCAAATTCATGTGATGAAAACTCAGATGAAACCTCAAAAACATATTTGTCATCACTGCCAGAAGTTGAAGCTAGGTTGTCGGGGAAGAATGTGTTAATAAGAATTCTCTCTGAGAAAGATAAAGGAGTGATGATGAATGTGTATAGAGAGTTAGAGAAACTTCATCTCTCAGTTATCAATGCTAGTTCCTTTTCCTTTGGGTCCTCTGTTCTTGCCATAACCATCATAGCCCAGATGGAGCAAGAGTTGAACATGAACATCCAGAAACTGGCAAAACAACTGAGATTTGGACTGATGCAATTGAATTAG 882 0.3605 MEESWTNWLCDMEPDDYSFINQSSINTDINVSSNLERPSKLLKTASSSTCSYILTFENENPPPTKVEPALKTKTKVVNSKNEQRRVNTQESNKKKSTFSKSTSHHTPDHIIAERLRREKISQQFIALSALIPNLKKMDKASVLGDAIKYVKELKEQVKVLEEQSKRKSVESVVVVKKLSQLSVDEDVSDTSSNSCDENSDETSKTYLSSLPEVEARLSGKNVLIRILSEKDKGVMMNVYRELEKLHLSVINASSFSFGSSVLAITIIAQMEQELNMNIQKLAKQLRFGLMQLN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02233 293 MobiDBLite consensus disorder prediction 76 108 - -
Tsu04g02233 293 Coils Coil 143 170 - -
Tsu04g02233 293 SMART finulus 110 159 IPR011598 GO:0046983
Tsu04g02233 293 Pfam Helix-loop-helix DNA-binding domain 109 153 IPR011598 GO:0046983
Tsu04g02233 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 174 IPR036638 GO:0046983
Tsu04g02233 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 153 IPR011598 GO:0046983
Tsu04g02233 293 Gene3D - 103 177 IPR036638 GO:0046983
Tsu04g02233 293 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 33 293 - -
Tsu04g02233 293 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 29 - -
Tsu04g02233 293 PANTHER BHLH TRANSCRIPTION FACTOR 1 29 - -
Tsu04g02233 293 PANTHER BHLH TRANSCRIPTION FACTOR 33 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02233 Tsu-Chr4 24890846 24894881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02233 17 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.742 4.30e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g02233 HLH 9.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02233 - - cam:101494527 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02233 04 24890846 24894881 Tsu04g02233 04 24890846 24894881 ECH